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3QLN
Biol. Unit 2
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Asym.Unit (52 KB)
Biol.Unit 1 (25 KB)
Biol.Unit 2 (24 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ATRX ADD DOMAIN IN FREE STATE
Authors
:
H. Li, D. J. Patel
Date
:
03 Feb 11 (Deposition) - 15 Jun 11 (Release) - 05 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Zinc Finger, Transcription, Histone Tail, Lysine Methylation, Nuclear Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Iwase, B. Xiang, S. Ghosh, T. Ren, P. W. Lewis, J. C. Cochrane, C. D. Allis, D. J. Picketts, D. J. Patel, H. Li, Y. Shi
Atrx Add Domain Links An Atypical Histone Methylation Recognition Mechanism To Human Mental-Retardation Syndrome
Nat. Struct. Mol. Biol. V. 18 769 2011
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
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Sites
(3, 3)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
CYS B:171 , CYS B:174 , CYS B:197 , CYS B:200
BINDING SITE FOR RESIDUE ZN B 1
2
AC5
SOFTWARE
CYS B:220 , CYS B:223 , CYS B:240 , CYS B:243
BINDING SITE FOR RESIDUE ZN B 2
3
AC6
SOFTWARE
CYS B:232 , CYS B:235 , CYS B:265 , CYS B:268
BINDING SITE FOR RESIDUE ZN B 3
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SAPs(SNPs)/Variants
(17, 17)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_012113 (G175E, chain B, )
02: VAR_012115 (N179S, chain B, )
03: VAR_001226 (P190A, chain B, )
04: VAR_012116 (P190L, chain B, )
05: VAR_012117 (P190S, chain B, )
06: VAR_001227 (L192F, chain B, )
07: VAR_012118 (V194I, chain B, )
08: VAR_001228 (C200S, chain B, )
09: VAR_012119 (Q219P, chain B, )
10: VAR_001229 (C220R, chain B, )
11: VAR_032625 (C220Y, chain B, )
12: VAR_001230 (W222S, chain B, )
13: VAR_001231 (C243F, chain B, )
14: VAR_001232 (R246C, chain B, )
15: VAR_010914 (R246L, chain B, )
16: VAR_012120 (G249C, chain B, )
17: VAR_001233 (G249D, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_012113
G
175
E
ATRX_HUMAN
Disease (ATRX)
---
B
G
175
E
02
UniProt
VAR_012115
N
179
S
ATRX_HUMAN
Disease (ATRX)
---
B
N
179
S
03
UniProt
VAR_001226
P
190
A
ATRX_HUMAN
Disease (ATRX)
---
B
P
190
A
04
UniProt
VAR_012116
P
190
L
ATRX_HUMAN
Disease (ATRX)
---
B
P
190
L
05
UniProt
VAR_012117
P
190
S
ATRX_HUMAN
Disease (ATRX)
---
B
P
190
S
06
UniProt
VAR_001227
L
192
F
ATRX_HUMAN
Disease (ATRX)
---
B
L
192
F
07
UniProt
VAR_012118
V
194
I
ATRX_HUMAN
Disease (ATRX)
---
B
V
194
I
08
UniProt
VAR_001228
C
200
S
ATRX_HUMAN
Disease (ATRX)
---
B
C
200
S
09
UniProt
VAR_012119
Q
219
P
ATRX_HUMAN
Disease (ATRX)
---
B
Q
219
P
10
UniProt
VAR_001229
C
220
R
ATRX_HUMAN
Disease (ATRX)
---
B
C
220
R
11
UniProt
VAR_032625
C
220
Y
ATRX_HUMAN
Disease (MRXSHF1)
---
B
C
220
Y
12
UniProt
VAR_001230
W
222
S
ATRX_HUMAN
Disease (ATRX)
---
B
W
222
S
13
UniProt
VAR_001231
C
243
F
ATRX_HUMAN
Disease (ATRX)
---
B
C
243
F
14
UniProt
VAR_001232
R
246
C
ATRX_HUMAN
Disease (ATRX)
---
B
R
246
C
15
UniProt
VAR_010914
R
246
L
ATRX_HUMAN
Disease (ATRX)
---
B
R
246
L
16
UniProt
VAR_012120
G
249
C
ATRX_HUMAN
Disease (ATRX)
---
B
G
249
C
17
UniProt
VAR_001233
G
249
D
ATRX_HUMAN
Disease (ATRX)
---
B
G
249
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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all PFAM domains
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Protein
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Chain B
Asymmetric Unit 1
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Asym.Unit (52 KB)
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