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3QL6
Asym. Unit
Info
Asym.Unit (120 KB)
Biol.Unit 1 (113 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF BOVINE LACTOPEROXIDASE WITH NIMESULIDE AT 1.7 A RESOLUTION
Authors
:
S. Yamini, A. K. Singh, R. P. Singh, M. Sinha, P. Kaur, S. Sharma, T. P. Sin
Date
:
02 Feb 11 (Deposition) - 02 Mar 11 (Release) - 02 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Bovine Lactoperoxidase, Iodide, Peg, Nimesulide, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Yamini, A. K. Singh, R. P. Singh, M. Sinha, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of The Complex Of Bovine Lactoperoxidae With Nimesulide At 1. 7 A Resolution
To Be Published
[
close entry info
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Hetero Components
(11, 30)
Info
All Hetero Components
01a: CALCIUM ION (CAa)
02a: 1,2-ETHANEDIOL (EDOa)
02b: 1,2-ETHANEDIOL (EDOb)
03a: GLYCEROL (GOLa)
03b: GLYCEROL (GOLb)
04a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
05a: IODIDE ION (IODa)
05b: IODIDE ION (IODb)
05c: IODIDE ION (IODc)
05d: IODIDE ION (IODd)
05e: IODIDE ION (IODe)
05f: IODIDE ION (IODf)
05g: IODIDE ION (IODg)
05h: IODIDE ION (IODh)
05i: IODIDE ION (IODi)
05j: IODIDE ION (IODj)
05k: IODIDE ION (IODk)
05l: IODIDE ION (IODl)
05m: IODIDE ION (IODm)
05n: IODIDE ION (IODn)
06a: N-ACETYL-D-GLUCOSAMINE (NAGa)
06b: N-ACETYL-D-GLUCOSAMINE (NAGb)
06c: N-ACETYL-D-GLUCOSAMINE (NAGc)
06d: N-ACETYL-D-GLUCOSAMINE (NAGd)
06e: N-ACETYL-D-GLUCOSAMINE (NAGe)
07a: 4-NITRO-2-PHENOXYMETHANESULFONANIL... (NIMa)
08a: DI(HYDROXYETHYL)ETHER (PEGa)
09a: THIOCYANATE ION (SCNa)
10a: PHOSPHOSERINE (SEPa)
11a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
2
Ligand/Ion
GLYCEROL
4
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
IOD
14
Ligand/Ion
IODIDE ION
6
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
NIM
1
Ligand/Ion
4-NITRO-2-PHENOXYMETHANESULFONANILIDE
8
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
9
SCN
1
Ligand/Ion
THIOCYANATE ION
10
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
11
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:110 , THR A:184 , PHE A:186 , ASP A:188 , SER A:190
BINDING SITE FOR RESIDUE CA A 606
02
AC2
SOFTWARE
HIS A:222 , HIS A:558
BINDING SITE FOR RESIDUE ZN A 617
03
AC3
SOFTWARE
MET A:101 , GLY A:104 , GLN A:105 , ASP A:108 , ASP A:112 , PHE A:113 , ALA A:114 , ARG A:255 , GLU A:258 , GLN A:259 , THR A:344 , PHE A:347 , ARG A:348 , GLY A:350 , HIS A:351 , VAL A:354 , LEU A:417 , LEU A:433 , ILE A:436 , ARG A:440 , NIM A:614 , HOH A:703
BINDING SITE FOR RESIDUE HEM A 605
04
AC4
SOFTWARE
ASN A:95 , ILE A:315 , GLN A:568 , HOH A:849
BINDING SITE FOR RESIDUE NAG A 596
05
AC5
SOFTWARE
ASN A:205 , SER A:208 , ALA A:214 , VAL A:215 , GLN A:217 , HOH A:803
BINDING SITE FOR RESIDUE NAG A 599
06
AC6
SOFTWARE
ASN A:241 , ALA A:244 , TRP A:384 , LYS A:388 , NAG A:602 , HOH A:734 , HOH A:802 , HOH A:860
BINDING SITE FOR RESIDUE NAG A 601
07
AC7
SOFTWARE
NAG A:601 , HOH A:860
BINDING SITE FOR RESIDUE NAG A 602
08
AC8
SOFTWARE
ASN A:332 , HOH A:1092
BINDING SITE FOR RESIDUE NAG A 604
09
AC9
SOFTWARE
TRP A:46 , VAL A:342 , TRP A:452
BINDING SITE FOR RESIDUE IOD A 707
10
BC1
SOFTWARE
ASN A:80
BINDING SITE FOR RESIDUE IOD A 708
11
BC2
SOFTWARE
ARG A:96 , HOH A:1085
BINDING SITE FOR RESIDUE IOD A 709
12
BC3
SOFTWARE
TRP A:530
BINDING SITE FOR RESIDUE IOD A 710
13
BC4
SOFTWARE
ARG A:397 , THR A:560
BINDING SITE FOR RESIDUE IOD A 711
14
BC5
SOFTWARE
HIS A:565 , ALA A:566 , PHE A:567
BINDING SITE FOR RESIDUE IOD A 712
15
BC6
SOFTWARE
ARG A:31 , HOH A:854
BINDING SITE FOR RESIDUE IOD A 714
16
BC7
SOFTWARE
SER A:359 , HOH A:1152
BINDING SITE FOR RESIDUE IOD A 713
17
BC8
SOFTWARE
LYS A:462
BINDING SITE FOR RESIDUE IOD A 715
18
BC9
SOFTWARE
PRO A:236 , THR A:425
BINDING SITE FOR RESIDUE IOD A 719
19
CC1
SOFTWARE
PRO A:149
BINDING SITE FOR RESIDUE IOD A 720
20
CC2
SOFTWARE
ALA A:225
BINDING SITE FOR RESIDUE IOD A 722
21
CC3
SOFTWARE
CYS A:248 , HOH A:811
BINDING SITE FOR RESIDUE SCN A 615
22
CC4
SOFTWARE
HIS A:377 , HIS A:429 , HOH A:818 , HOH A:899
BINDING SITE FOR RESIDUE EDO A 609
23
CC5
SOFTWARE
SER A:33 , ALA A:35 , ARG A:41 , ARG A:338 , HOH A:608 , HOH A:910
BINDING SITE FOR RESIDUE EDO A 610
24
CC6
SOFTWARE
ARG A:45 , TRP A:46 , LEU A:47 , PRO A:48 , HOH A:659
BINDING SITE FOR RESIDUE PEG A 611
25
CC7
SOFTWARE
LEU A:36 , ASN A:333 , SER A:334 , VAL A:335 , HOH A:746
BINDING SITE FOR RESIDUE GOL A 612
26
CC8
SOFTWARE
ASP A:362 , GLU A:363 , ASN A:364
BINDING SITE FOR RESIDUE GOL A 613
27
CC9
SOFTWARE
GLN A:105 , HIS A:109 , PHE A:113 , ALA A:114 , PHE A:254 , ARG A:255 , GLU A:258 , PHE A:381 , PRO A:424 , HEM A:605
BINDING SITE FOR RESIDUE NIM A 614
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (A:12-594)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PERL_BOVIN
129-711
1
A:12-594
[
close PROSITE info
]
Exons
(9, 9)
Info
All Exons
Exon 1.5 (A:1-31)
Exon 1.6 (A:31-74)
Exon 1.7 (A:75-143)
Exon 1.8 (A:144-252)
Exon 1.9 (A:252-305)
Exon 1.10 (A:306-390)
Exon 1.11 (A:390-448)
Exon 1.12 (A:448-527)
Exon 1.13 (A:527-595)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.4/1.5
02: Boundary 1.5/1.6
03: Boundary 1.6/1.7
04: Boundary 1.7/1.8
05: Boundary 1.8/1.9
06: Boundary 1.9/1.10
07: Boundary 1.10/1.11
08: Boundary 1.11/1.12
09: Boundary 1.12/1.13
10: Boundary 1.13/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000016986
1
ENSBTAE00000279445
chr19:
8430632-8430751
120
PERL_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000016986
2
ENSBTAE00000137885
chr19:
8435757-8435834
78
PERL_BOVIN
1-26
26
0
-
-
1.3
ENSBTAT00000016986
3
ENSBTAE00000137889
chr19:
8437178-8437265
88
PERL_BOVIN
26-55
30
0
-
-
1.4
ENSBTAT00000016986
4
ENSBTAE00000137892
chr19:
8441906-8442066
161
PERL_BOVIN
55-109
55
0
-
-
1.5
ENSBTAT00000016986
5
ENSBTAE00000137896
chr19:
8443636-8443753
118
PERL_BOVIN
109-148
40
1
A:1-31
31
1.6
ENSBTAT00000016986
6
ENSBTAE00000137903
chr19:
8444165-8444294
130
PERL_BOVIN
148-191
44
1
A:31-74
44
1.7
ENSBTAT00000016986
7
ENSBTAE00000137906
chr19:
8445032-8445238
207
PERL_BOVIN
192-260
69
1
A:75-143
69
1.8
ENSBTAT00000016986
8
ENSBTAE00000137912
chr19:
8446677-8447001
325
PERL_BOVIN
261-369
109
1
A:144-252
109
1.9
ENSBTAT00000016986
9
ENSBTAE00000137915
chr19:
8448604-8448764
161
PERL_BOVIN
369-422
54
1
A:252-305
54
1.10
ENSBTAT00000016986
10
ENSBTAE00000137918
chr19:
8457180-8457432
253
PERL_BOVIN
423-507
85
1
A:306-390
85
1.11
ENSBTAT00000016986
11
ENSBTAE00000137921
chr19:
8458505-8458678
174
PERL_BOVIN
507-565
59
1
A:390-448
59
1.12
ENSBTAT00000016986
12
ENSBTAE00000137923
chr19:
8459302-8459539
238
PERL_BOVIN
565-644
80
1
A:448-527
80
1.13
ENSBTAT00000016986
13
ENSBTAE00000279432
chr19:
8459727-8460382
656
PERL_BOVIN
644-712
69
1
A:527-595
69
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_An_peroxidase_3ql6A01 (A:21-567)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: An_peroxidase]
(45)
Family
:
An_peroxidase
(45)
Bos taurus (Bovine)
(11)
1a
An_peroxidase-3ql6A01
A:21-567
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Asymmetric Unit 1
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