PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3QK8
Asym. Unit
Info
Asym.Unit (513 KB)
Biol.Unit 1 (506 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF ENOYL-COA HYDRATASE ECHA15 FROM MYCOBACTERIUM MARINUM IN COMPLEX WITH AN UNKNOWN LIGAND
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
31 Jan 11 (Deposition) - 09 Feb 11 (Release) - 22 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Ssgcid, Nih, Niaid, Sbri, Uw, Emerald Biostructures, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
[
close entry info
]
Hetero Components
(3, 22)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
3a: UNKNOWN LIGAND (UNLa)
3b: UNKNOWN LIGAND (UNLb)
3c: UNKNOWN LIGAND (UNLc)
3d: UNKNOWN LIGAND (UNLd)
3e: UNKNOWN LIGAND (UNLe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
EDO
16
Ligand/Ion
1,2-ETHANEDIOL
3
UNL
5
Ligand/Ion
UNKNOWN LIGAND
[
close Hetero Component info
]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:163 , TYR A:166 , TYR A:167 , HOH A:704 , SER F:186 , THR F:187 , HOH F:601 , HOH F:1119 , HOH F:1263
BINDING SITE FOR RESIDUE EDO F 297
02
AC2
SOFTWARE
ASP A:103 , ASN A:211 , TRP A:215 , HOH A:293 , EDO C:301
BINDING SITE FOR RESIDUE EDO A 305
03
AC3
SOFTWARE
LYS B:163 , TYR B:166 , TYR B:167 , SER C:186 , THR C:187 , HOH C:286 , HOH C:296 , HOH C:533 , HOH C:635
BINDING SITE FOR RESIDUE EDO C 297
04
AC4
SOFTWARE
MET B:89 , ARG B:93 , HOH B:1195 , TRP F:215
BINDING SITE FOR RESIDUE EDO B 301
05
AC5
SOFTWARE
ASP B:103 , ASN B:211 , TRP B:215 , HOH B:904 , EDO F:301
BINDING SITE FOR RESIDUE EDO B 305
06
AC6
SOFTWARE
LYS C:163 , TYR C:166 , TYR C:167 , SER E:186 , THR E:187 , HOH E:1101 , HOH F:1049
BINDING SITE FOR RESIDUE EDO E 297
07
AC7
SOFTWARE
TRP A:215 , ARG A:218 , EDO A:305 , MET C:89 , ARG C:93 , HOH C:652
BINDING SITE FOR RESIDUE EDO C 301
08
AC8
SOFTWARE
EDO A:269 , ASP C:103 , ASN C:211 , TRP C:215
BINDING SITE FOR RESIDUE EDO C 305
09
AC9
SOFTWARE
SER A:186 , THR A:187 , HOH A:284 , HOH A:317 , HOH A:623 , HOH A:811 , LYS D:163 , TYR D:166 , TYR D:167
BINDING SITE FOR RESIDUE EDO A 297
10
BC1
SOFTWARE
MET D:89 , ARG D:90 , ARG D:93 , HOH D:1130 , HOH D:1142 , TRP E:215 , ARG E:218
BINDING SITE FOR RESIDUE EDO D 301
11
BC2
SOFTWARE
ASP D:103 , ASN D:211 , TRP D:215 , EDO D:269 , HOH D:1068
BINDING SITE FOR RESIDUE EDO D 305
12
BC3
SOFTWARE
SER B:186 , THR B:187 , HOH B:391 , HOH B:742 , HOH B:871 , HOH B:1182 , LYS E:163 , TYR E:166 , TYR E:167
BINDING SITE FOR RESIDUE EDO B 297
13
BC4
SOFTWARE
TRP D:215 , ARG D:218 , EDO D:305 , MET E:89 , ARG E:93 , HOH E:1085
BINDING SITE FOR RESIDUE EDO D 269
14
BC5
SOFTWARE
SER D:186 , THR D:187 , HOH D:713 , HOH D:1165 , HOH D:1233 , LYS F:163 , TYR F:166 , TYR F:167 , HOH F:271
BINDING SITE FOR RESIDUE EDO D 297
15
BC6
SOFTWARE
TRP B:215 , ARG B:218 , EDO B:305 , MET F:89 , ARG F:93 , HOH F:646
BINDING SITE FOR RESIDUE EDO F 301
16
BC7
SOFTWARE
GLY E:70 , GLY E:116 , ALA E:117
BINDING SITE FOR RESIDUE CL E 269
17
BC8
SOFTWARE
MET A:89 , ARG A:90 , ARG A:93 , HOH A:583 , LEU B:237 , TRP C:215 , ARG C:218 , EDO C:305
BINDING SITE FOR RESIDUE EDO A 269
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3qk8a_ (A:)
1b: SCOP_d3qk8b_ (B:)
1c: SCOP_d3qk8c_ (C:)
1d: SCOP_d3qk8d_ (D:)
1e: SCOP_d3qk8e_ (E:)
1f: SCOP_d3qk8f_ (F:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
automated matches
(96)
Protein domain
:
automated matches
(96)
Mycobacterium marinum [TaxId: 216594]
(3)
1a
d3qk8a_
A:
1b
d3qk8b_
B:
1c
d3qk8c_
C:
1d
d3qk8d_
D:
1e
d3qk8e_
E:
1f
d3qk8f_
F:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_ECH_3qk8F01 (F:15-257)
1b: PFAM_ECH_3qk8F02 (F:15-257)
1c: PFAM_ECH_3qk8F03 (F:15-257)
1d: PFAM_ECH_3qk8F04 (F:15-257)
1e: PFAM_ECH_3qk8F05 (F:15-257)
1f: PFAM_ECH_3qk8F06 (F:15-257)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
ClpP_crotonase
(88)
Family
:
ECH
(52)
Mycobacterium marinum (strain ATCC BAA-535 / M)
(6)
1a
ECH-3qk8F01
F:15-257
1b
ECH-3qk8F02
F:15-257
1c
ECH-3qk8F03
F:15-257
1d
ECH-3qk8F04
F:15-257
1e
ECH-3qk8F05
F:15-257
1f
ECH-3qk8F06
F:15-257
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (513 KB)
Header - Asym.Unit
Biol.Unit 1 (506 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3QK8
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
