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3QJX
Asym. Unit
Info
Asym.Unit (343 KB)
Biol.Unit 1 (336 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI AMINOPEPTIDASE N IN COMPLEX WITH L-SERINE
Authors
:
A. Addlagatta, R. Gumpena, C. Kishor, R. J. Ganji
Date
:
31 Jan 11 (Deposition) - 16 Nov 11 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Thermolysin Like Catalytic Domain, Hydrolase, L-Serine Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Gumpena, C. Kishor, R. J. Ganji, A. Addlagatta
Discovery Of Alpha, Beta- And Alpha, Gamma-Diamino Acid Scaffolds For The Inhibition Of M1 Family Aminopeptidases
Chemmedchem V. 6 1971 2011
[
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Hetero Components
(5, 19)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
2a: MALONATE ION (MLIa)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
4a: SERINE (SERa)
5a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
13
Ligand/Ion
GLYCEROL
2
MLI
1
Ligand/Ion
MALONATE ION
3
NA
3
Ligand/Ion
SODIUM ION
4
SER
1
Mod. Amino Acid
SERINE
5
ZN
1
Ligand/Ion
ZINC ION
[
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]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:297 , HIS A:301 , GLU A:320 , SER A:900
BINDING SITE FOR RESIDUE ZN A 880
02
AC2
SOFTWARE
SER A:332 , ASP A:333 , GLY A:335 , HOH A:1444 , HOH A:1643 , HOH A:1689
BINDING SITE FOR RESIDUE NA A 890
03
AC3
SOFTWARE
ASP A:452 , HOH A:1288 , HOH A:1289 , HOH A:1640
BINDING SITE FOR RESIDUE NA A 891
04
AC4
SOFTWARE
MET A:260 , ASN A:373 , GLN A:821 , HOH A:1506 , HOH A:1530 , HOH A:1574
BINDING SITE FOR RESIDUE NA A 892
05
AC5
SOFTWARE
GLU A:121 , MET A:260 , ALA A:262 , GLU A:264 , HIS A:297 , GLU A:298 , HIS A:301 , LYS A:319 , GLU A:320 , TYR A:381 , ZN A:880 , GOL A:976 , HOH A:1425 , HOH A:1638
BINDING SITE FOR RESIDUE SER A 900
06
AC6
SOFTWARE
ARG A:641 , GLU A:642 , THR A:645 , ARG A:686 , PHE A:690 , ALA A:722 , HOH A:1029 , HOH A:1432 , HOH A:1573
BINDING SITE FOR RESIDUE MLI A 950
07
AC7
SOFTWARE
LEU A:532 , TRP A:546 , ASP A:566 , ALA A:567 , SER A:570 , HOH A:965
BINDING SITE FOR RESIDUE GOL A 970
08
AC8
SOFTWARE
TYR A:376 , THR A:377 , TYR A:381 , GLU A:382 , ARG A:825 , GOL A:982 , HOH A:1638 , HOH A:1705
BINDING SITE FOR RESIDUE GOL A 971
09
AC9
SOFTWARE
TRP A:71 , THR A:72 , TRP A:74 , ARG A:669 , VAL A:670 , GLU A:671 , GOL A:973 , HOH A:1515 , HOH A:1794
BINDING SITE FOR RESIDUE GOL A 972
10
BC1
SOFTWARE
LEU A:61 , VAL A:62 , TRP A:74 , ARG A:669 , GLU A:671 , GOL A:972 , HOH A:1794
BINDING SITE FOR RESIDUE GOL A 973
11
BC2
SOFTWARE
HIS A:11 , GLN A:467 , ARG A:468 , THR A:469 , LYS A:478 , GLN A:479 , PRO A:480 , ALA A:515 , HOH A:1115 , HOH A:1373 , HOH A:1491
BINDING SITE FOR RESIDUE GOL A 974
12
BC3
SOFTWARE
GLU A:292 , VAL A:670 , HIS A:672 , HOH A:1390 , HOH A:1565
BINDING SITE FOR RESIDUE GOL A 975
13
BC4
SOFTWARE
GLY A:261 , ARG A:293 , HIS A:297 , TYR A:381 , SER A:900 , GOL A:977 , HOH A:1467 , HOH A:1705
BINDING SITE FOR RESIDUE GOL A 976
14
BC5
SOFTWARE
ASN A:259 , GLY A:261 , LYS A:274 , TYR A:275 , ARG A:783 , GOL A:976 , GOL A:982 , HOH A:1776 , HOH A:1789
BINDING SITE FOR RESIDUE GOL A 977
15
BC6
SOFTWARE
THR A:284 , LYS A:286 , LEU A:714 , LYS A:748 , HOH A:874 , GOL A:981 , HOH A:1498 , HOH A:1758
BINDING SITE FOR RESIDUE GOL A 978
16
BC7
SOFTWARE
VAL A:162 , GLN A:177 , VAL A:529 , GLN A:549 , GLN A:550 , PHE A:553 , GOL A:983 , HOH A:1040 , HOH A:1469 , HOH A:1575 , HOH A:1777
BINDING SITE FOR RESIDUE GOL A 979
17
BC8
SOFTWARE
THR A:284 , LYS A:286 , ASP A:287 , LEU A:714 , LYS A:748 , HOH A:874 , GOL A:978 , HOH A:1498 , HOH A:1758
BINDING SITE FOR RESIDUE GOL A 981
18
BC9
SOFTWARE
LYS A:274 , TYR A:275 , ARG A:783 , GOL A:971 , GOL A:977
BINDING SITE FOR RESIDUE GOL A 982
19
CC1
SOFTWARE
GLN A:177 , VAL A:529 , GLN A:550 , GOL A:979 , HOH A:1226 , HOH A:1469 , HOH A:1777
BINDING SITE FOR RESIDUE GOL A 983
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:294-303)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
AMPN_ECOLI
294-303
1
A:294-303
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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Sorry, no Info available
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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wireframe 100
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (343 KB)
Header - Asym.Unit
Biol.Unit 1 (336 KB)
Header - Biol.Unit 1
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