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3QJM
Asym. Unit
Info
Asym.Unit (39 KB)
Biol.Unit 1 (18 KB)
Biol.Unit 2 (19 KB)
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(1)
Title
:
STRUCTURAL FLEXIBILITY OF SHANK PDZ DOMAIN IS IMPORTANT FOR ITS BINDING TO DIFFERENT LIGANDS
Authors
:
J. H. Lee, H. Park, S. J. Park, H. J. Kim, S. H. Eom
Date
:
30 Jan 11 (Deposition) - 13 Apr 11 (Release) - 13 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.31
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Pdz Domain, Protein-Protein Interaction, Beta-Pix, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. H. Lee, H. Park, S. J. Park, H. J. Kim, S. H. Eom
The Structural Flexibility Of The Shank1 Pdz Domain Is Important For Its Binding To Different Ligands
Biochem. Biophys. Res. Commun. V. 407 207 2011
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:663-757,B:663-757)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
SHAN1_RAT
663-757
2
A:663-757
B:663-757
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Exons
(4, 7)
Info
All Exons
Exon 1.15 (- | B:654-655)
Exon 1.17 (A:656-681 | B:655-681)
Exon 1.18 (A:687-724 | B:689-724)
Exon 1.19 (A:725-758 | B:725-758)
View:
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All Exon Boundaries
1: Boundary 1.14/1.15
2: Boundary 1.15/1.17
3: Boundary 1.17/1.18
4: Boundary 1.18/1.19
5: Boundary 1.19/1.20
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000026100
1
ENSRNOE00000272017
chr1:
94791887-94791920
34
SHAN1_RAT
-
0
0
-
-
1.2
ENSRNOT00000026100
2
ENSRNOE00000272009
chr1:
94794319-94794616
298
SHAN1_RAT
1-85
85
0
-
-
1.3
ENSRNOT00000026100
3
ENSRNOE00000186599
chr1:
94794778-94794981
204
SHAN1_RAT
86-153
68
0
-
-
1.4
ENSRNOT00000026100
4
ENSRNOE00000300486
chr1:
94795393-94795464
72
SHAN1_RAT
154-177
24
0
-
-
1.5
ENSRNOT00000026100
5
ENSRNOE00000272001
chr1:
94797836-94797944
109
SHAN1_RAT
178-214
37
0
-
-
1.6
ENSRNOT00000026100
6
ENSRNOE00000271993
chr1:
94798161-94798312
152
SHAN1_RAT
214-264
51
0
-
-
1.7
ENSRNOT00000026100
7
ENSRNOE00000186706
chr1:
94800979-94801146
168
SHAN1_RAT
265-320
56
0
-
-
1.8
ENSRNOT00000026100
8
ENSRNOE00000313183
chr1:
94801526-94801642
117
SHAN1_RAT
321-359
39
0
-
-
1.9
ENSRNOT00000026100
9
ENSRNOE00000186782
chr1:
94807204-94807281
78
SHAN1_RAT
360-385
26
0
-
-
1.10
ENSRNOT00000026100
10
ENSRNOE00000271239
chr1:
94807523-94807589
67
SHAN1_RAT
386-408
23
0
-
-
1.11
ENSRNOT00000026100
11
ENSRNOE00000271234
chr1:
94807849-94808179
331
SHAN1_RAT
408-518
111
0
-
-
1.12
ENSRNOT00000026100
12
ENSRNOE00000271228
chr1:
94808929-94809122
194
SHAN1_RAT
518-583
66
0
-
-
1.13
ENSRNOT00000026100
13
ENSRNOE00000271223
chr1:
94814184-94814297
114
SHAN1_RAT
583-621
39
0
-
-
1.14
ENSRNOT00000026100
14
ENSRNOE00000271216
chr1:
94814441-94814516
76
SHAN1_RAT
621-646
26
0
-
-
1.15
ENSRNOT00000026100
15
ENSRNOE00000271210
chr1:
94814931-94814957
27
SHAN1_RAT
646-655
10
1
-
B:654-655
-
2
1.17
ENSRNOT00000026100
17
ENSRNOE00000271202
chr1:
94823419-94823501
83
SHAN1_RAT
655-683
29
2
A:656-681
B:655-681
26
27
1.18
ENSRNOT00000026100
18
ENSRNOE00000271197
chr1:
94823745-94823869
125
SHAN1_RAT
683-724
42
2
A:687-724
B:689-724
38
36
1.19
ENSRNOT00000026100
19
ENSRNOE00000271186
chr1:
94824379-94824514
136
SHAN1_RAT
725-770
46
2
A:725-758
B:725-758
34
34
1.20
ENSRNOT00000026100
20
ENSRNOE00000271179
chr1:
94825010-94825090
81
SHAN1_RAT
770-797
28
0
-
-
1.21
ENSRNOT00000026100
21
ENSRNOE00000271147
chr1:
94825645-94825668
24
SHAN1_RAT
797-805
9
0
-
-
1.22
ENSRNOT00000026100
22
ENSRNOE00000271174
chr1:
94825852-94825920
69
SHAN1_RAT
805-828
24
0
-
-
1.23
ENSRNOT00000026100
23
ENSRNOE00000271166
chr1:
94826271-94826389
119
SHAN1_RAT
828-867
40
0
-
-
1.24
ENSRNOT00000026100
24
ENSRNOE00000271162
chr1:
94832245-94832341
97
SHAN1_RAT
868-900
33
0
-
-
1.25
ENSRNOT00000026100
25
ENSRNOE00000271157
chr1:
94832865-94835952
3088
SHAN1_RAT
900-1929
1030
0
-
-
1.27
ENSRNOT00000026100
27
ENSRNOE00000187264
chr1:
94838875-94840584
1710
SHAN1_RAT
1929-2167
239
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3qjma_ (A:)
1b: SCOP_d3qjmb_ (B:)
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Class
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All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
PDZ domain
(180)
Protein domain
:
Shank1, PDZ domain
(5)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(5)
1a
d3qjma_
A:
1b
d3qjmb_
B:
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_PDZ_3qjmB01 (B:663-754)
1b: PFAM_PDZ_3qjmB02 (B:663-754)
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Clan
:
PDZ-like
(184)
Family
:
PDZ
(172)
Rattus norvegicus (Rat)
(23)
1a
PDZ-3qjmB01
B:663-754
1b
PDZ-3qjmB02
B:663-754
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Asymmetric Unit 1
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Asym.Unit (39 KB)
Header - Asym.Unit
Biol.Unit 1 (18 KB)
Header - Biol.Unit 1
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