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3QJ9
Asym. Unit
Info
Asym.Unit (192 KB)
Biol.Unit 1 (185 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FATTY ACID AMIDE HYDROLASE WITH SMALL MOLECULE INHIBITOR
Authors
:
X. Min, N. P. C. Walker, Z. Wang
Date
:
28 Jan 11 (Deposition) - 27 Apr 11 (Release) - 18 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein-Inhibitor Complex, Faah, Fatty-Acid Amide Hydrolase, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Min, S. T. Thibault, A. C. Porter, D. J. Gustin, T. J. Carlson, H. Xu, M. Lindstrom, G. Xu, C. Uyeda, Z. Ma, Y. Li, F. Kayser, N. P. Walker, Z. Wang
Discovery And Molecular Basis Of Potent Noncovalent Inhibitors Of Fatty Acid Amide Hydrolase (Faah).
Proc. Natl. Acad. Sci. Usa V. 108 7379 2011
[
close entry info
]
Hetero Components
(4, 26)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: TRIETHYLENE GLYCOL (PGEa)
4a: 1-{(3S)-1-[4-(1-BENZOFURAN-2-YL)PY... (QJ9a)
4b: 1-{(3S)-1-[4-(1-BENZOFURAN-2-YL)PY... (QJ9b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
21
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
2
Ligand/Ion
GLYCEROL
3
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
4
QJ9
2
Ligand/Ion
1-{(3S)-1-[4-(1-BENZOFURAN-2-YL)PYRIMIDIN-2-YL]PIPERIDIN-3-YL}-3-ETHYL-1,3-DIHYDRO-2H-BENZIMIDAZOL-2-ONE
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:192 , SER A:193 , PHE A:194 , ILE A:238 , GLY A:239 , SER A:241 , PHE A:381 , LEU A:404 , ILE A:407 , LEU A:429 , GLY A:485 , THR A:488 , ILE A:491 , HOH A:806
BINDING SITE FOR RESIDUE QJ9 A 600
02
AC2
SOFTWARE
GLU A:288 , LYS A:295 , GLU A:316 , ARG A:320
BINDING SITE FOR RESIDUE EDO A 580
03
AC3
SOFTWARE
ARG A:34 , PHE A:396 , VAL A:397
BINDING SITE FOR RESIDUE EDO A 581
04
AC4
SOFTWARE
ARG A:437 , PRO A:438 , ARG A:439 , LYS A:443
BINDING SITE FOR RESIDUE GOL A 582
05
AC5
SOFTWARE
ASN A:108 , LYS A:109 , ASN A:112 , HOH A:631
BINDING SITE FOR RESIDUE EDO A 583
06
AC6
SOFTWARE
LYS A:446 , HIS A:449 , GLU B:515
BINDING SITE FOR RESIDUE EDO A 584
07
AC7
SOFTWARE
TYR A:329 , GLU A:331 , LYS A:350
BINDING SITE FOR RESIDUE EDO A 585
08
AC8
SOFTWARE
ALA A:275 , VAL A:276 , GLN A:277 , ILE A:451 , ASN A:498 , CYS A:499 , ASP A:501 , HOH A:628
BINDING SITE FOR RESIDUE EDO A 586
09
AC9
SOFTWARE
THR A:42 , HOH A:889 , ARG B:323 , HOH B:812
BINDING SITE FOR RESIDUE EDO A 587
10
BC1
SOFTWARE
GLN A:46 , LYS A:47
BINDING SITE FOR RESIDUE EDO A 588
11
BC2
SOFTWARE
LEU A:75 , THR A:76 , GLY A:226 , GLY A:250 , ILE A:251 , ARG A:285 , HOH A:597 , HOH A:772
BINDING SITE FOR RESIDUE PGE A 589
12
BC3
SOFTWARE
VAL A:509 , THR A:510
BINDING SITE FOR RESIDUE EDO A 590
13
BC4
SOFTWARE
LEU B:192 , SER B:193 , PHE B:194 , ILE B:238 , GLY B:239 , PHE B:381 , LEU B:404 , ILE B:407 , LEU B:429 , GLY B:485 , THR B:488 , ILE B:491 , EDO B:583
BINDING SITE FOR RESIDUE QJ9 B 600
14
BC5
SOFTWARE
LYS B:47 , GLN B:48 , SER B:51 , THR B:115 , SER B:116 , PHE B:201 , HOH B:735
BINDING SITE FOR RESIDUE EDO B 580
15
BC6
SOFTWARE
TYR B:330 , ASP B:333 , ILE B:368 , SER B:492 , TYR B:493 , LEU B:496 , TYR B:497
BINDING SITE FOR RESIDUE EDO B 581
16
BC7
SOFTWARE
GLU B:288 , LEU B:292 , LYS B:295 , GLU B:316 , ARG B:320 , HOH B:751
BINDING SITE FOR RESIDUE GOL B 582
17
BC8
SOFTWARE
SER B:193 , PHE B:194 , PRO B:484 , GLY B:485 , QJ9 B:600 , HOH B:733 , HOH B:787
BINDING SITE FOR RESIDUE EDO B 583
18
BC9
SOFTWARE
THR B:76 , LEU B:77 , GLN B:81 , HOH B:621
BINDING SITE FOR RESIDUE EDO B 584
19
CC1
SOFTWARE
THR B:511 , THR B:573 , HOH B:694
BINDING SITE FOR RESIDUE EDO B 585
20
CC2
SOFTWARE
ARG B:343
BINDING SITE FOR RESIDUE EDO B 586
21
CC3
SOFTWARE
PRO B:78 , LEU B:80 , GLN B:81 , HOH B:755 , HOH B:955
BINDING SITE FOR RESIDUE EDO B 587
22
CC4
SOFTWARE
ARG B:45 , PHE B:396 , HOH B:728 , HOH B:869
BINDING SITE FOR RESIDUE EDO B 588
23
CC5
SOFTWARE
ARG B:344 , THR B:513 , GLU B:515 , ASP B:516 , HOH B:838
BINDING SITE FOR RESIDUE EDO B 589
24
CC6
SOFTWARE
TYR B:370
BINDING SITE FOR RESIDUE EDO B 590
25
CC7
SOFTWARE
ARG B:352 , LEU B:571
BINDING SITE FOR RESIDUE EDO B 591
26
CC8
SOFTWARE
MET B:191 , HOH B:931
BINDING SITE FOR RESIDUE EDO B 592
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: AMIDASES (A:215-246,B:215-246)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AMIDASES
PS00571
Amidases signature.
FAAH1_RAT
215-246
2
A:215-246
B:215-246
[
close PROSITE info
]
Exons
(15, 30)
Info
All Exons
Exon 1.1a (A:29-65 (gaps) | B:34-65)
Exon 1.2 (A:66-103 | B:66-103)
Exon 1.3 (A:104-148 | B:104-148)
Exon 1.4 (A:149-193 | B:149-193)
Exon 1.5 (A:193-262 | B:193-262)
Exon 1.6 (A:262-276 | B:262-276)
Exon 1.7 (A:276-317 | B:276-317)
Exon 1.8 (A:318-359 | B:318-359)
Exon 1.9 (A:360-392 | B:360-392)
Exon 1.10 (A:392-425 | B:392-425)
Exon 1.11 (A:426-439 | B:426-439)
Exon 1.12a (A:439-452 | B:439-452)
Exon 1.15b (A:453-489 | B:453-489)
Exon 1.16a (A:489-537 | B:489-537)
Exon 1.17 (A:538-577 | B:538-577)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12a
13: Boundary 1.12a/1.15b
14: Boundary 1.15b/1.16a
15: Boundary 1.16a/1.17
16: Boundary 1.17/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSRNOT00000015961
1a
ENSRNOE00000225920
chr5:
136310965-136311220
256
FAAH1_RAT
1-65
65
2
A:29-65 (gaps)
B:34-65
57
32
1.2
ENSRNOT00000015961
2
ENSRNOE00000103673
chr5:
136318583-136318696
114
FAAH1_RAT
66-103
38
2
A:66-103
B:66-103
38
38
1.3
ENSRNOT00000015961
3
ENSRNOE00000103796
chr5:
136321039-136321173
135
FAAH1_RAT
104-148
45
2
A:104-148
B:104-148
45
45
1.4
ENSRNOT00000015961
4
ENSRNOE00000103928
chr5:
136321369-136321502
134
FAAH1_RAT
149-193
45
2
A:149-193
B:149-193
45
45
1.5
ENSRNOT00000015961
5
ENSRNOE00000104062
chr5:
136321598-136321804
207
FAAH1_RAT
193-262
70
2
A:193-262
B:193-262
70
70
1.6
ENSRNOT00000015961
6
ENSRNOE00000104198
chr5:
136322049-136322089
41
FAAH1_RAT
262-276
15
2
A:262-276
B:262-276
15
15
1.7
ENSRNOT00000015961
7
ENSRNOE00000111834
chr5:
136322314-136322438
125
FAAH1_RAT
276-317
42
2
A:276-317
B:276-317
42
42
1.8
ENSRNOT00000015961
8
ENSRNOE00000104455
chr5:
136323598-136323723
126
FAAH1_RAT
318-359
42
2
A:318-359
B:318-359
42
42
1.9
ENSRNOT00000015961
9
ENSRNOE00000112023
chr5:
136324170-136324267
98
FAAH1_RAT
360-392
33
2
A:360-392
B:360-392
33
33
1.10
ENSRNOT00000015961
10
ENSRNOE00000105978
chr5:
136325413-136325512
100
FAAH1_RAT
392-425
34
2
A:392-425
B:392-425
34
34
1.11
ENSRNOT00000015961
11
ENSRNOE00000106118
chr5:
136325776-136325816
41
FAAH1_RAT
426-439
14
2
A:426-439
B:426-439
14
14
1.12a
ENSRNOT00000015961
12a
ENSRNOE00000318212
chr5:
136326509-136326548
40
FAAH1_RAT
439-452
14
2
A:439-452
B:439-452
14
14
1.15b
ENSRNOT00000015961
15b
ENSRNOE00000225847
chr5:
136326988-136327096
109
FAAH1_RAT
453-489
37
2
A:453-489
B:453-489
37
37
1.16a
ENSRNOT00000015961
16a
ENSRNOE00000110963
chr5:
136327622-136327767
146
FAAH1_RAT
489-537
49
2
A:489-537
B:489-537
49
49
1.17
ENSRNOT00000015961
17
ENSRNOE00000112221
chr5:
136327964-136329817
1854
FAAH1_RAT
538-579
42
2
A:538-577
B:538-577
40
40
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3qj9a_ (A:)
1b: SCOP_d3qj9b_ (B:)
View:
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Amidase signature (AS) enzymes
(41)
Superfamily
:
Amidase signature (AS) enzymes
(41)
Family
:
Amidase signature (AS) enzymes
(41)
Protein domain
:
automated matches
(19)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(19)
1a
d3qj9a_
A:
1b
d3qj9b_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Amidase_3qj9B01 (B:95-562)
1b: PFAM_Amidase_3qj9B02 (B:95-562)
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Clans
(
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(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Amidase]
(17)
Family
:
Amidase
(17)
Rattus norvegicus (Rat)
(15)
1a
Amidase-3qj9B01
B:95-562
1b
Amidase-3qj9B02
B:95-562
[
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