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3QIM
Asym. Unit
Info
Asym.Unit (180 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 2 (88 KB)
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(1)
Title
:
HISTIDINE 416 OF THE PERIPLAMSIC BINDING PROTEIN NIKA IS ESSENTIAL FOR NICKEL UPTAKE IN ESCHERICHIA COLI
Authors
:
C. Cavazza, L. Martin, E. Laffly, H. Lebrette, M. V. Cherrier, L. Zeppie P. Richaud, M. Carriere, J. C. Fontecilla-Camps
Date
:
27 Jan 11 (Deposition) - 02 Mar 11 (Release) - 02 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Metal Transport, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Cavazza, L. Martin, E. Laffly, H. Lebrette, M. V. Cherrier, L. Zeppieri, P. Richaud, M. Carriere, J. C. Fontecilla-Camps
Histidine 416 Of The Periplasmic Binding Protein Nika Is Essential For Nickel Uptake In Escherichia Coli
Febs Lett. V. 585 711 2011
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Hetero Components
(3, 25)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
1l: ACETATE ION (ACTl)
1m: ACETATE ION (ACTm)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
13
Ligand/Ion
ACETATE ION
2
GOL
8
Ligand/Ion
GLYCEROL
3
SO4
4
Ligand/Ion
SULFATE ION
[
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:159 , ILE A:166 , LEU A:167 , HOH A:529 , HOH B:624
BINDING SITE FOR RESIDUE GOL A 503
02
AC2
SOFTWARE
VAL A:273 , ASN A:274 , LYS A:275 , GLN A:309 , TYR A:310
BINDING SITE FOR RESIDUE GOL A 504
03
AC3
SOFTWARE
PHE A:147 , LYS A:148 , ASN A:149 , LYS A:157
BINDING SITE FOR RESIDUE GOL A 505
04
AC4
SOFTWARE
PRO A:48 , LYS A:52 , SER A:53 , TRP A:54
BINDING SITE FOR RESIDUE GOL A 506
05
AC5
SOFTWARE
ARG A:457
BINDING SITE FOR RESIDUE ACT A 507
06
AC6
SOFTWARE
GLU A:221 , SER A:353 , PHE A:394 , ARG A:396 , SO4 A:518
BINDING SITE FOR RESIDUE GOL A 508
07
AC7
SOFTWARE
ASN A:482 , GLN A:496
BINDING SITE FOR RESIDUE ACT A 509
08
AC8
SOFTWARE
GLU A:86 , ARG A:89 , PRO A:144 , PHE A:147 , HIS A:150 , GLN A:366 , HOH A:757 , HOH A:771
BINDING SITE FOR RESIDUE GOL A 510
09
AC9
SOFTWARE
ASN A:261 , GLU A:262 , LEU A:263 , HOH A:620 , HOH A:629
BINDING SITE FOR RESIDUE ACT A 511
10
BC1
SOFTWARE
ASN A:235 , ALA A:237 , GLN A:423 , HOH A:647
BINDING SITE FOR RESIDUE ACT A 512
11
BC2
SOFTWARE
ALA A:486 , HOH A:540 , HOH A:689
BINDING SITE FOR RESIDUE ACT A 513
12
BC3
SOFTWARE
ARG A:89 , ARG A:95 , VAL A:108 , ASP A:109 , VAL A:110 , ASN A:281 , HOH A:616
BINDING SITE FOR RESIDUE ACT A 514
13
BC4
SOFTWARE
THR A:23 , ARG A:97 , HOH A:666 , HOH A:737 , GLN B:309 , LYS B:314
BINDING SITE FOR RESIDUE GOL A 515
14
BC5
SOFTWARE
GLY A:219 , ASN A:220 , GLY A:222 , LEU A:223
BINDING SITE FOR RESIDUE ACT A 516
15
BC6
SOFTWARE
THR A:23 , PRO A:24 , GLN A:26 , HOH A:581 , HOH A:591
BINDING SITE FOR RESIDUE SO4 A 517
16
BC7
SOFTWARE
GLN A:385 , PHE A:394 , HIS A:395 , ARG A:396 , GOL A:508 , HOH A:592
BINDING SITE FOR RESIDUE SO4 A 518
17
BC8
SOFTWARE
LYS A:330 , ASP A:331 , ILE A:332 , ARG A:365 , LYS B:148
BINDING SITE FOR RESIDUE SO4 A 519
18
BC9
SOFTWARE
TRP B:10 , PRO B:11 , GLY B:219 , ASN B:220 , GLY B:222 , LEU B:223
BINDING SITE FOR RESIDUE GOL B 503
19
CC1
SOFTWARE
LYS A:335 , HOH A:775 , ARG B:341
BINDING SITE FOR RESIDUE ACT B 504
20
CC2
SOFTWARE
TYR B:22 , ARG B:97 , TRP B:100 , ACT B:506 , HOH B:580
BINDING SITE FOR RESIDUE ACT B 505
21
CC3
SOFTWARE
TYR B:22 , TRP B:100 , ARG B:137 , ACT B:505 , ACT B:507 , HOH B:580 , HOH B:620
BINDING SITE FOR RESIDUE ACT B 506
22
CC4
SOFTWARE
TRP B:398 , ACT B:506 , HOH B:580 , HOH B:582
BINDING SITE FOR RESIDUE ACT B 507
23
CC5
SOFTWARE
GLN B:385 , HIS B:395 , ARG B:396 , HOH B:554
BINDING SITE FOR RESIDUE ACT B 508
24
CC6
SOFTWARE
THR B:23 , GLN B:26 , GLU B:378 , HOH B:698
BINDING SITE FOR RESIDUE ACT B 509
25
CC7
SOFTWARE
GLU A:343 , ARG A:384 , ARG A:389 , LEU B:430 , ARG B:457 , HOH B:595
BINDING SITE FOR RESIDUE SO4 B 510
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SBP_BACTERIAL_5 (A:51-73,B:51-73)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SBP_BACTERIAL_5
PS01040
Bacterial extracellular solute-binding proteins, family 5 signature.
NIKA_ECOLI
73-95
2
A:51-73
B:51-73
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3qima_ (A:)
1b: SCOP_d3qimb_ (B:)
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Classes
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Nickel-binding periplasmic protein NikA
(18)
Escherichia coli [TaxId: 562]
(18)
1a
d3qima_
A:
1b
d3qimb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_SBP_bac_5_3qimB01 (B:45-419)
1b: PFAM_SBP_bac_5_3qimB02 (B:45-419)
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Organisms
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)
Clan
:
PBP
(391)
Family
:
SBP_bac_5
(33)
Escherichia coli (strain K12)
(12)
1a
SBP_bac_5-3qimB01
B:45-419
1b
SBP_bac_5-3qimB02
B:45-419
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Asymmetric Unit 1
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