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3QID
Biol. Unit 2
Info
Asym.Unit (256 KB)
Biol.Unit 1 (169 KB)
Biol.Unit 2 (166 KB)
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(1)
Title
:
CRYSTAL STRUCTURES AND FUNCTIONAL ANALYSIS OF MURINE NOROVIRUS RNA-DEPENDENT RNA POLYMERASE
Authors
:
K. H. Kim, A. Intekhab, J. H. Lee
Date
:
27 Jan 11 (Deposition) - 21 Dec 11 (Release) - 21 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (2x)
Biol. Unit 2: B,C (1x)
Keywords
:
Rna Polymerase, Viral Replication Enzyme, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. H. Lee, I. Alam, K. R. Han, S. Cho, S. Shin, S. Kang, J. M. Yang, K. H. Kim
Crystal Structures Of Murine Norovirus-1 Rna-Dependent Rna Polymerase.
J. Gen. Virol. V. 92 1607 2011
[
close entry info
]
Hetero Components
(3, 25)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
2a: MANGANESE (III) ION (MN3a)
2b: MANGANESE (III) ION (MN3b)
2c: MANGANESE (III) ION (MN3c)
3a: SULFATE ION (SO4a)
3aa: SULFATE ION (SO4aa)
3ab: SULFATE ION (SO4ab)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
3z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
7
Ligand/Ion
GLYCEROL
2
MN3
2
Ligand/Ion
MANGANESE (III) ION
3
SO4
16
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC9 (SOFTWARE)
02: BC2 (SOFTWARE)
03: BC8 (SOFTWARE)
04: BC9 (SOFTWARE)
05: CC1 (SOFTWARE)
06: CC2 (SOFTWARE)
07: CC3 (SOFTWARE)
08: CC4 (SOFTWARE)
09: CC5 (SOFTWARE)
10: CC6 (SOFTWARE)
11: CC7 (SOFTWARE)
12: CC8 (SOFTWARE)
13: CC9 (SOFTWARE)
14: DC1 (SOFTWARE)
15: DC2 (SOFTWARE)
16: DC3 (SOFTWARE)
17: DC4 (SOFTWARE)
18: DC5 (SOFTWARE)
19: DC6 (SOFTWARE)
20: DC7 (SOFTWARE)
21: DC8 (SOFTWARE)
22: DC9 (SOFTWARE)
23: EC1 (SOFTWARE)
24: EC2 (SOFTWARE)
25: EC3 (SOFTWARE)
26: EC4 (SOFTWARE)
27: EC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC9
SOFTWARE
GLU A:338 , ASN A:353 , SO4 A:530 , VAL B:327
BINDING SITE FOR RESIDUE SO4 A 528
02
BC2
SOFTWARE
ARG A:239 , SO4 A:528 , LYS B:360
BINDING SITE FOR RESIDUE SO4 A 530
03
BC8
SOFTWARE
ASP B:410 , ARG B:411 , HIS B:453 , HOH B:597
BINDING SITE FOR RESIDUE SO4 B 3
04
BC9
SOFTWARE
LYS B:158 , SER B:159
BINDING SITE FOR RESIDUE SO4 B 521
05
CC1
SOFTWARE
ASP B:117 , THR B:120 , LYS B:130 , MET B:195 , HOH B:542
BINDING SITE FOR RESIDUE SO4 B 522
06
CC2
SOFTWARE
LYS A:158 , LYS B:29 , HIS B:426 , GLN B:427 , GLU B:431
BINDING SITE FOR RESIDUE SO4 B 523
07
CC3
SOFTWARE
HIS B:149 , ASN B:152
BINDING SITE FOR RESIDUE SO4 B 524
08
CC4
SOFTWARE
ILE B:85 , ARG B:329 , ASP B:331 , HOH B:647
BINDING SITE FOR RESIDUE SO4 B 525
09
CC5
SOFTWARE
ARG B:248
BINDING SITE FOR RESIDUE SO4 B 526
10
CC6
SOFTWARE
GLY B:51 , SER B:52 , SER B:61 , LEU B:62 , HOH B:571
BINDING SITE FOR RESIDUE SO4 B 527
11
CC7
SOFTWARE
PRO B:82 , GLN B:83
BINDING SITE FOR RESIDUE SO4 B 528
12
CC8
SOFTWARE
ASP B:243 , ASP B:347 , HOH B:621 , HOH B:642
BINDING SITE FOR RESIDUE MN3 B 529
13
CC9
SOFTWARE
SER B:27 , THR B:28 , ASN B:425
BINDING SITE FOR RESIDUE GOL B 2
14
DC1
SOFTWARE
THR A:328 , GLU A:355 , THR B:328 , GLU B:355 , GOL B:531
BINDING SITE FOR RESIDUE GOL B 530
15
DC2
SOFTWARE
VAL A:327 , LYS A:360 , GLU B:338 , ASN B:353 , GOL B:530
BINDING SITE FOR RESIDUE GOL B 531
16
DC3
SOFTWARE
THR B:247 , ARG B:248 , HOH B:645
BINDING SITE FOR RESIDUE GOL B 532
17
DC4
SOFTWARE
HIS C:149 , ASN C:152
BINDING SITE FOR RESIDUE SO4 C 2
18
DC5
SOFTWARE
ARG C:408
BINDING SITE FOR RESIDUE SO4 C 521
19
DC6
SOFTWARE
THR C:247 , ARG C:248 , HOH C:615
BINDING SITE FOR RESIDUE SO4 C 522
20
DC7
SOFTWARE
LYS C:158 , SER C:159
BINDING SITE FOR RESIDUE SO4 C 523
21
DC8
SOFTWARE
GLY C:51 , SER C:52 , SER C:61 , LEU C:62
BINDING SITE FOR RESIDUE SO4 C 524
22
DC9
SOFTWARE
ARG C:248
BINDING SITE FOR RESIDUE SO4 C 525
23
EC1
SOFTWARE
ASP C:410 , ARG C:411 , HIS C:453 , HOH C:608
BINDING SITE FOR RESIDUE SO4 C 526
24
EC2
SOFTWARE
ASP C:243 , ASP C:347 , HOH C:633
BINDING SITE FOR RESIDUE MN3 C 527
25
EC3
SOFTWARE
SER C:27 , THR C:28 , LYS C:29 , ASN C:425
BINDING SITE FOR RESIDUE GOL C 1
26
EC4
SOFTWARE
THR C:11 , ALA C:13 , GLY C:14
BINDING SITE FOR RESIDUE GOL C 528
27
EC5
SOFTWARE
LYS B:158 , ASN C:425 , HIS C:426 , GLN C:427 , ASN C:428 , GLU C:431
BINDING SITE FOR RESIDUE GOL C 529
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3qida_ (A:)
1b: SCOP_d3qidb_ (B:)
1c: SCOP_d3qidc_ (C:)
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(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
automated matches
(100)
Murine norovirus 1 [TaxId: 223997]
(6)
1a
d3qida_
A:
1b
d3qidb_
B:
1c
d3qidc_
C:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
Nucleic
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Sidechain
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
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Asymmetric Unit 1
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Asym.Unit (256 KB)
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