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3QID
Biol. Unit 1
Info
Asym.Unit (256 KB)
Biol.Unit 1 (169 KB)
Biol.Unit 2 (166 KB)
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(1)
Title
:
CRYSTAL STRUCTURES AND FUNCTIONAL ANALYSIS OF MURINE NOROVIRUS RNA-DEPENDENT RNA POLYMERASE
Authors
:
K. H. Kim, A. Intekhab, J. H. Lee
Date
:
27 Jan 11 (Deposition) - 21 Dec 11 (Release) - 21 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (2x)
Biol. Unit 2: B,C (1x)
Keywords
:
Rna Polymerase, Viral Replication Enzyme, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. H. Lee, I. Alam, K. R. Han, S. Cho, S. Shin, S. Kang, J. M. Yang, K. H. Kim
Crystal Structures Of Murine Norovirus-1 Rna-Dependent Rna Polymerase.
J. Gen. Virol. V. 92 1607 2011
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Hetero Components
(3, 32)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
2a: MANGANESE (III) ION (MN3a)
2b: MANGANESE (III) ION (MN3b)
2c: MANGANESE (III) ION (MN3c)
3a: SULFATE ION (SO4a)
3aa: SULFATE ION (SO4aa)
3ab: SULFATE ION (SO4ab)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
3z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
6
Ligand/Ion
GLYCEROL
2
MN3
2
Ligand/Ion
MANGANESE (III) ION
3
SO4
24
Ligand/Ion
SULFATE ION
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: CC2 (SOFTWARE)
18: DC1 (SOFTWARE)
19: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:410 , ARG A:411 , HIS A:453 , HOH A:691
BINDING SITE FOR RESIDUE SO4 A 1
02
AC2
SOFTWARE
THR A:120 , SER A:121 , HOH A:656
BINDING SITE FOR RESIDUE SO4 A 521
03
AC3
SOFTWARE
ARG A:408
BINDING SITE FOR RESIDUE SO4 A 522
04
AC4
SOFTWARE
THR A:28 , GLY A:51 , SER A:52 , SER A:61 , LEU A:62
BINDING SITE FOR RESIDUE SO4 A 523
05
AC5
SOFTWARE
TYR A:246 , THR A:247 , ARG A:248 , HOH A:560
BINDING SITE FOR RESIDUE SO4 A 524
06
AC6
SOFTWARE
HIS A:149 , ASN A:152
BINDING SITE FOR RESIDUE SO4 A 525
07
AC7
SOFTWARE
TRP A:134 , GLY A:136
BINDING SITE FOR RESIDUE SO4 A 526
08
AC8
SOFTWARE
PHE A:238 , ASP A:401 , TRP A:405
BINDING SITE FOR RESIDUE SO4 A 527
09
AC9
SOFTWARE
GLU A:338 , ASN A:353 , SO4 A:530 , VAL B:327
BINDING SITE FOR RESIDUE SO4 A 528
10
BC1
SOFTWARE
SER A:9 , SER A:61 , GLN A:64 , ARG A:67
BINDING SITE FOR RESIDUE SO4 A 529
11
BC2
SOFTWARE
ARG A:239 , SO4 A:528 , LYS B:360
BINDING SITE FOR RESIDUE SO4 A 530
12
BC3
SOFTWARE
LYS A:29 , HIS A:426 , GLN A:427 , GLU A:431
BINDING SITE FOR RESIDUE SO4 A 531
13
BC4
SOFTWARE
ASP A:243 , ASP A:347 , HOH A:620 , HOH A:648 , HOH A:655 , HOH A:664
BINDING SITE FOR RESIDUE MN3 A 532
14
BC5
SOFTWARE
PRO A:82 , GLN A:83 , GLU A:84
BINDING SITE FOR RESIDUE GOL A 533
15
BC6
SOFTWARE
SER A:223 , MET A:224 , ASN A:225 , ASP A:494
BINDING SITE FOR RESIDUE GOL A 534
16
BC7
SOFTWARE
GLY A:157 , SER A:159
BINDING SITE FOR RESIDUE GOL A 535
17
CC2
SOFTWARE
LYS A:158 , LYS B:29 , HIS B:426 , GLN B:427 , GLU B:431
BINDING SITE FOR RESIDUE SO4 B 523
18
DC1
SOFTWARE
THR A:328 , GLU A:355 , THR B:328 , GLU B:355 , GOL B:531
BINDING SITE FOR RESIDUE GOL B 530
19
DC2
SOFTWARE
VAL A:327 , LYS A:360 , GLU B:338 , ASN B:353 , GOL B:530
BINDING SITE FOR RESIDUE GOL B 531
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3qida_ (A:)
1b: SCOP_d3qidb_ (B:)
1c: SCOP_d3qidc_ (C:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
automated matches
(100)
Murine norovirus 1 [TaxId: 223997]
(6)
1a
d3qida_
A:
1b
d3qidb_
B:
1c
d3qidc_
C:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (256 KB)
Header - Asym.Unit
Biol.Unit 1 (169 KB)
Header - Biol.Unit 1
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