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3QID
Asym. Unit
Info
Asym.Unit (256 KB)
Biol.Unit 1 (169 KB)
Biol.Unit 2 (166 KB)
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(1)
Title
:
CRYSTAL STRUCTURES AND FUNCTIONAL ANALYSIS OF MURINE NOROVIRUS RNA-DEPENDENT RNA POLYMERASE
Authors
:
K. H. Kim, A. Intekhab, J. H. Lee
Date
:
27 Jan 11 (Deposition) - 21 Dec 11 (Release) - 21 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (2x)
Biol. Unit 2: B,C (1x)
Keywords
:
Rna Polymerase, Viral Replication Enzyme, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. H. Lee, I. Alam, K. R. Han, S. Cho, S. Shin, S. Kang, J. M. Yang, K. H. Kim
Crystal Structures Of Murine Norovirus-1 Rna-Dependent Rna Polymerase.
J. Gen. Virol. V. 92 1607 2011
[
close entry info
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Hetero Components
(3, 41)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
2a: MANGANESE (III) ION (MN3a)
2b: MANGANESE (III) ION (MN3b)
2c: MANGANESE (III) ION (MN3c)
3a: SULFATE ION (SO4a)
3aa: SULFATE ION (SO4aa)
3ab: SULFATE ION (SO4ab)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
3z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
10
Ligand/Ion
GLYCEROL
2
MN3
3
Ligand/Ion
MANGANESE (III) ION
3
SO4
28
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(41, 41)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:410 , ARG A:411 , HIS A:453 , HOH A:691
BINDING SITE FOR RESIDUE SO4 A 1
02
AC2
SOFTWARE
THR A:120 , SER A:121 , HOH A:656
BINDING SITE FOR RESIDUE SO4 A 521
03
AC3
SOFTWARE
ARG A:408
BINDING SITE FOR RESIDUE SO4 A 522
04
AC4
SOFTWARE
THR A:28 , GLY A:51 , SER A:52 , SER A:61 , LEU A:62
BINDING SITE FOR RESIDUE SO4 A 523
05
AC5
SOFTWARE
TYR A:246 , THR A:247 , ARG A:248 , HOH A:560
BINDING SITE FOR RESIDUE SO4 A 524
06
AC6
SOFTWARE
HIS A:149 , ASN A:152
BINDING SITE FOR RESIDUE SO4 A 525
07
AC7
SOFTWARE
TRP A:134 , GLY A:136
BINDING SITE FOR RESIDUE SO4 A 526
08
AC8
SOFTWARE
PHE A:238 , ASP A:401 , TRP A:405
BINDING SITE FOR RESIDUE SO4 A 527
09
AC9
SOFTWARE
GLU A:338 , ASN A:353 , SO4 A:530 , VAL B:327
BINDING SITE FOR RESIDUE SO4 A 528
10
BC1
SOFTWARE
SER A:9 , SER A:61 , GLN A:64 , ARG A:67
BINDING SITE FOR RESIDUE SO4 A 529
11
BC2
SOFTWARE
ARG A:239 , SO4 A:528 , LYS B:360
BINDING SITE FOR RESIDUE SO4 A 530
12
BC3
SOFTWARE
LYS A:29 , HIS A:426 , GLN A:427 , GLU A:431
BINDING SITE FOR RESIDUE SO4 A 531
13
BC4
SOFTWARE
ASP A:243 , ASP A:347 , HOH A:620 , HOH A:648 , HOH A:655 , HOH A:664
BINDING SITE FOR RESIDUE MN3 A 532
14
BC5
SOFTWARE
PRO A:82 , GLN A:83 , GLU A:84
BINDING SITE FOR RESIDUE GOL A 533
15
BC6
SOFTWARE
SER A:223 , MET A:224 , ASN A:225 , ASP A:494
BINDING SITE FOR RESIDUE GOL A 534
16
BC7
SOFTWARE
GLY A:157 , SER A:159
BINDING SITE FOR RESIDUE GOL A 535
17
BC8
SOFTWARE
ASP B:410 , ARG B:411 , HIS B:453 , HOH B:597
BINDING SITE FOR RESIDUE SO4 B 3
18
BC9
SOFTWARE
LYS B:158 , SER B:159
BINDING SITE FOR RESIDUE SO4 B 521
19
CC1
SOFTWARE
ASP B:117 , THR B:120 , LYS B:130 , MET B:195 , HOH B:542
BINDING SITE FOR RESIDUE SO4 B 522
20
CC2
SOFTWARE
LYS A:158 , LYS B:29 , HIS B:426 , GLN B:427 , GLU B:431
BINDING SITE FOR RESIDUE SO4 B 523
21
CC3
SOFTWARE
HIS B:149 , ASN B:152
BINDING SITE FOR RESIDUE SO4 B 524
22
CC4
SOFTWARE
ILE B:85 , ARG B:329 , ASP B:331 , HOH B:647
BINDING SITE FOR RESIDUE SO4 B 525
23
CC5
SOFTWARE
ARG B:248
BINDING SITE FOR RESIDUE SO4 B 526
24
CC6
SOFTWARE
GLY B:51 , SER B:52 , SER B:61 , LEU B:62 , HOH B:571
BINDING SITE FOR RESIDUE SO4 B 527
25
CC7
SOFTWARE
PRO B:82 , GLN B:83
BINDING SITE FOR RESIDUE SO4 B 528
26
CC8
SOFTWARE
ASP B:243 , ASP B:347 , HOH B:621 , HOH B:642
BINDING SITE FOR RESIDUE MN3 B 529
27
CC9
SOFTWARE
SER B:27 , THR B:28 , ASN B:425
BINDING SITE FOR RESIDUE GOL B 2
28
DC1
SOFTWARE
THR A:328 , GLU A:355 , THR B:328 , GLU B:355 , GOL B:531
BINDING SITE FOR RESIDUE GOL B 530
29
DC2
SOFTWARE
VAL A:327 , LYS A:360 , GLU B:338 , ASN B:353 , GOL B:530
BINDING SITE FOR RESIDUE GOL B 531
30
DC3
SOFTWARE
THR B:247 , ARG B:248 , HOH B:645
BINDING SITE FOR RESIDUE GOL B 532
31
DC4
SOFTWARE
HIS C:149 , ASN C:152
BINDING SITE FOR RESIDUE SO4 C 2
32
DC5
SOFTWARE
ARG C:408
BINDING SITE FOR RESIDUE SO4 C 521
33
DC6
SOFTWARE
THR C:247 , ARG C:248 , HOH C:615
BINDING SITE FOR RESIDUE SO4 C 522
34
DC7
SOFTWARE
LYS C:158 , SER C:159
BINDING SITE FOR RESIDUE SO4 C 523
35
DC8
SOFTWARE
GLY C:51 , SER C:52 , SER C:61 , LEU C:62
BINDING SITE FOR RESIDUE SO4 C 524
36
DC9
SOFTWARE
ARG C:248
BINDING SITE FOR RESIDUE SO4 C 525
37
EC1
SOFTWARE
ASP C:410 , ARG C:411 , HIS C:453 , HOH C:608
BINDING SITE FOR RESIDUE SO4 C 526
38
EC2
SOFTWARE
ASP C:243 , ASP C:347 , HOH C:633
BINDING SITE FOR RESIDUE MN3 C 527
39
EC3
SOFTWARE
SER C:27 , THR C:28 , LYS C:29 , ASN C:425
BINDING SITE FOR RESIDUE GOL C 1
40
EC4
SOFTWARE
THR C:11 , ALA C:13 , GLY C:14
BINDING SITE FOR RESIDUE GOL C 528
41
EC5
SOFTWARE
LYS B:158 , ASN C:425 , HIS C:426 , GLN C:427 , ASN C:428 , GLU C:431
BINDING SITE FOR RESIDUE GOL C 529
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
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Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3qida_ (A:)
1b: SCOP_d3qidb_ (B:)
1c: SCOP_d3qidc_ (C:)
View:
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
automated matches
(100)
Murine norovirus 1 [TaxId: 223997]
(6)
1a
d3qida_
A:
1b
d3qidb_
B:
1c
d3qidc_
C:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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Atom Selection
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all
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Nucleic
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Protein & NOT Site
Protein & NOT PROSITE
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