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3QIC
Asym. Unit
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Asym.Unit (80 KB)
Biol.Unit 1 (76 KB)
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(1)
Title
:
THE STRUCTURE OF HUMAN GLUCOKINASE E339K MUTATION
Authors
:
Q. Liu, S. Liu, J. Liu
Date
:
27 Jan 11 (Deposition) - 01 Jun 11 (Release) - 01 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Glycolysis, Kinase, Sugar Binding, Phosphorylation, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. Liu, Y. Shen, S. Liu, J. Weng, J. Liu
Crystal Structure Of E339K Mutated Human Glucokinase Reveal Changes In The Atp Binding Site.
Febs Lett. V. 585 1175 2011
[
close entry info
]
Hetero Components
(3, 8)
Info
All Hetero Components
1a: ALPHA-D-GLUCOSE (GLCa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: PHOSPHOSERINE (SEPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GLC
1
Ligand/Ion
ALPHA-D-GLUCOSE
2
GOL
6
Ligand/Ion
GLYCEROL
3
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
[
close Hetero Component info
]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:151 , PHE A:152 , PRO A:153 , THR A:168 , LYS A:169 , ASN A:204 , ASP A:205 , ILE A:225 , GLY A:229 , CYS A:230 , ASN A:231 , GLU A:256 , GLN A:287 , GLU A:290 , HOH A:702 , HOH A:709
BINDING SITE FOR RESIDUE GLC A 500
2
AC2
SOFTWARE
MET A:11 , MET A:107 , TYR A:108 , SER A:109
BINDING SITE FOR RESIDUE GOL A 600
3
AC3
SOFTWARE
ARG A:63 , SER A:64 , THR A:65 , GLU A:248 , GLY A:249 , ARG A:250
BINDING SITE FOR RESIDUE GOL A 601
4
AC4
SOFTWARE
GLY A:170 , SER A:281 , ALA A:282 , ASN A:283 , LYS A:296 , TYR A:297 , ARG A:327
BINDING SITE FOR RESIDUE GOL A 602
5
AC5
SOFTWARE
LYS A:32 , ARG A:35 , ARG A:36
BINDING SITE FOR RESIDUE GOL A 603
6
AC6
SOFTWARE
VAL A:71 , ASP A:73
BINDING SITE FOR RESIDUE GOL A 604
7
AC7
SOFTWARE
GLY A:295 , LYS A:296 , TYR A:297 , GLY A:299 , GLU A:300 , GLY A:328 , PHE A:330 , GLU A:331 , THR A:332
BINDING SITE FOR RESIDUE GOL A 605
[
close Site info
]
SAPs(SNPs)/Variants
(46, 46)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_010583 (M11T, chain A, )
02: VAR_010584 (R36W, chain A, )
03: VAR_010585 (A53S, chain A, )
04: VAR_003693 (E70K, chain A, )
05: VAR_003694 (G80A, chain A, )
06: VAR_003695 (G80S, chain A, )
07: VAR_003696 (M107T, chain A, )
08: VAR_010586 (Y108H, chain A, )
09: VAR_012352 (I110T, chain A, )
10: VAR_012353 (A119D, chain A, )
11: VAR_003697 (S131P, chain A, )
12: VAR_010587 (H137R, chain A, )
13: VAR_010588 (F150S, chain A, )
14: VAR_012350 (L164P, chain A, )
15: VAR_010589 (T168P, chain A, )
16: VAR_003698 (G175R, chain A, )
17: VAR_003699 (V182M, chain A, )
18: VAR_003700 (A188T, chain A, )
19: VAR_003701 (V203A, chain A, )
20: VAR_010590 (T209M, chain A, )
21: VAR_012351 (M210K, chain A, )
22: VAR_010591 (M210T, chain A, )
23: VAR_010592 (C213R, chain A, )
24: VAR_003702 (E221K, chain A, )
25: VAR_003703 (V226M, chain A, )
26: VAR_003704 (G227C, chain A, )
27: VAR_003705 (T228M, chain A, )
28: VAR_003706 (E256K, chain A, )
29: VAR_003707 (W257R, chain A, )
30: VAR_010593 (A259T, chain A, )
31: VAR_010594 (G261E, chain A, )
32: VAR_003708 (G261R, chain A, )
33: VAR_003709 (E279Q, chain A, )
34: VAR_003710 (G299R, chain A, )
35: VAR_003712 (E300K, chain A, )
36: VAR_003711 (E300Q, chain A, )
37: VAR_003713 (L309P, chain A, )
38: VAR_010595 (S336L, chain A, )
39: VAR_066615 (T342P, chain A, )
40: VAR_010596 (V367M, chain A, )
41: VAR_010597 (C382Y, chain A, )
42: VAR_010598 (A384T, chain A, )
43: VAR_012354 (G385V, chain A, )
44: VAR_010599 (R392C, chain A, )
45: VAR_003714 (K414E, chain A, )
46: VAR_003715 (V455M, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_010583
A
11
T
HXK4_HUMAN
Polymorphism
116093166
A
M
11
T
02
UniProt
VAR_010584
R
36
W
HXK4_HUMAN
Disease (MODY2)
---
A
R
36
W
03
UniProt
VAR_010585
A
53
S
HXK4_HUMAN
Disease (MODY2)
---
A
A
53
S
04
UniProt
VAR_003693
E
70
K
HXK4_HUMAN
Disease (MODY2)
---
A
E
70
K
05
UniProt
VAR_003694
G
80
A
HXK4_HUMAN
Disease (MODY2)
---
A
G
80
A
06
UniProt
VAR_003695
G
80
S
HXK4_HUMAN
Disease (MODY2)
---
A
G
80
S
07
UniProt
VAR_003696
M
107
T
HXK4_HUMAN
Polymorphism
---
A
M
107
T
08
UniProt
VAR_010586
Y
108
H
HXK4_HUMAN
Disease (MODY2)
---
A
Y
108
H
09
UniProt
VAR_012352
I
110
T
HXK4_HUMAN
Disease (MODY2)
---
A
I
110
T
10
UniProt
VAR_012353
A
119
D
HXK4_HUMAN
Disease (MODY2)
---
A
A
119
D
11
UniProt
VAR_003697
S
131
P
HXK4_HUMAN
Disease (MODY2)
---
A
S
131
P
12
UniProt
VAR_010587
H
137
R
HXK4_HUMAN
Disease (MODY2)
---
A
H
137
R
13
UniProt
VAR_010588
F
150
S
HXK4_HUMAN
Disease (MODY2)
---
A
F
150
S
14
UniProt
VAR_012350
L
164
P
HXK4_HUMAN
Disease (MODY2)
---
A
L
164
P
15
UniProt
VAR_010589
T
168
P
HXK4_HUMAN
Disease (MODY2)
---
A
T
168
P
16
UniProt
VAR_003698
G
175
R
HXK4_HUMAN
Disease (MODY2)
---
A
G
175
R
17
UniProt
VAR_003699
V
182
M
HXK4_HUMAN
Disease (MODY2)
---
A
V
182
M
18
UniProt
VAR_003700
A
188
T
HXK4_HUMAN
Disease (MODY2)
---
A
A
188
T
19
UniProt
VAR_003701
V
203
A
HXK4_HUMAN
Disease (MODY2)
---
A
V
203
A
20
UniProt
VAR_010590
T
209
M
HXK4_HUMAN
Disease (MODY2)
---
A
T
209
M
21
UniProt
VAR_012351
M
210
K
HXK4_HUMAN
Disease (MODY2)
---
A
M
210
K
22
UniProt
VAR_010591
M
210
T
HXK4_HUMAN
Disease (MODY2)
---
A
M
210
T
23
UniProt
VAR_010592
C
213
R
HXK4_HUMAN
Disease (MODY2)
---
A
C
213
R
24
UniProt
VAR_003702
E
221
K
HXK4_HUMAN
Disease (MODY2)
---
A
E
221
K
25
UniProt
VAR_003703
V
226
M
HXK4_HUMAN
Disease (MODY2)
---
A
V
226
M
26
UniProt
VAR_003704
G
227
C
HXK4_HUMAN
Disease (MODY2)
---
A
G
227
C
27
UniProt
VAR_003705
T
228
M
HXK4_HUMAN
Disease (MODY2)
---
A
T
228
M
28
UniProt
VAR_003706
E
256
K
HXK4_HUMAN
Disease (MODY2)
---
A
E
256
K
29
UniProt
VAR_003707
W
257
R
HXK4_HUMAN
Disease (MODY2)
---
A
W
257
R
30
UniProt
VAR_010593
A
259
T
HXK4_HUMAN
Disease (MODY2)
---
A
A
259
T
31
UniProt
VAR_010594
G
261
E
HXK4_HUMAN
Disease (MODY2)
---
A
G
261
E
32
UniProt
VAR_003708
G
261
R
HXK4_HUMAN
Disease (MODY2)
---
A
G
261
R
33
UniProt
VAR_003709
E
279
Q
HXK4_HUMAN
Disease (MODY2)
104894005
A
E
279
Q
34
UniProt
VAR_003710
G
299
R
HXK4_HUMAN
Disease (MODY2)
---
A
G
299
R
35
UniProt
VAR_003712
E
300
K
HXK4_HUMAN
Disease (MODY2)
---
A
E
300
K
36
UniProt
VAR_003711
E
300
Q
HXK4_HUMAN
Disease (MODY2)
---
A
E
300
Q
37
UniProt
VAR_003713
L
309
P
HXK4_HUMAN
Disease (MODY2)
---
A
L
309
P
38
UniProt
VAR_010595
S
336
L
HXK4_HUMAN
Disease (MODY2)
---
A
S
336
L
39
UniProt
VAR_066615
T
342
P
HXK4_HUMAN
Polymorphism
---
A
T
342
P
40
UniProt
VAR_010596
V
367
M
HXK4_HUMAN
Disease (MODY2)
---
A
V
367
M
41
UniProt
VAR_010597
C
382
Y
HXK4_HUMAN
Disease (MODY2)
---
A
C
382
Y
42
UniProt
VAR_010598
A
384
T
HXK4_HUMAN
Disease (MODY2)
---
A
A
384
T
43
UniProt
VAR_012354
G
385
V
HXK4_HUMAN
Disease (MODY2)
---
A
G
385
V
44
UniProt
VAR_010599
R
392
C
HXK4_HUMAN
Disease (MODY2)
---
A
R
392
C
45
UniProt
VAR_003714
K
414
E
HXK4_HUMAN
Disease (MODY2)
---
A
K
414
E
46
UniProt
VAR_003715
V
455
M
HXK4_HUMAN
Disease (HHF3)
---
A
V
455
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: HEXOKINASE_2 (A:12-454)
2: HEXOKINASE_1 (A:146-171)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEXOKINASE_2
PS51748
Hexokinase domain profile.
HXK4_HUMAN
10-454
1
A:12-454
2
HEXOKINASE_1
PS00378
Hexokinase domain signature.
HXK4_HUMAN
146-171
1
A:146-171
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3qica1 (A:7-218)
1b: SCOP_d3qica2 (A:219-459)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
automated matches
(111)
Protein domain
:
automated matches
(111)
Human (Homo sapiens) [TaxId: 9606]
(38)
1a
d3qica1
A:7-218
1b
d3qica2
A:219-459
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Hexokinase_1_3qicA01 (A:12-217)
2a: PFAM_Hexokinase_2_3qicA02 (A:219-458)
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Clans
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(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Actin_ATPase
(173)
Family
:
Hexokinase_1
(12)
Homo sapiens (Human)
(4)
1a
Hexokinase_1-3qicA01
A:12-217
Family
:
Hexokinase_2
(12)
Homo sapiens (Human)
(4)
2a
Hexokinase_2-3qicA02
A:219-458
[
close Pfam info
]
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