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3QH5
Asym. Unit
Info
Asym.Unit (125 KB)
Biol.Unit 1 (119 KB)
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(1)
Title
:
STRUCTURE OF THERMOLYSIN IN COMPLEX WITH N-CARBOBENZYLOXY-L-ASPARTIC ACID AND L-PHENYLALANINE METHYL ESTER
Authors
:
G. Birrane, B. Bhyravbhatla, M. Navia
Date
:
25 Jan 11 (Deposition) - 04 Jan 12 (Release) - 02 Jul 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Metalloproteinase, L-Phenylalanine Methyl Ester, N- Carbobenzyloxy-L-Asparic Acid, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
G. Birrane, B. Bhyravbhatla, M. A. Navia
Synthesis Of Aspartame By Thermolysin: An X-Ray Structural Study.
Acs Med. Chem. Lett. V. 5 706 2014
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Hetero Components
(6, 12)
Info
All Hetero Components
1a: METHYL L-PHENYLALANINATE (0A9a)
1b: METHYL L-PHENYLALANINATE (0A9b)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: N-[(BENZYLOXY)CARBONYL]-L-ASPARTIC... (NX6a)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
5a: TETRAETHYLENE GLYCOL (PG4a)
6a: ZINC ION (ZNa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
0A9
2
Ligand/Ion
METHYL L-PHENYLALANINATE
2
CA
4
Ligand/Ion
CALCIUM ION
3
NX6
1
Ligand/Ion
N-[(BENZYLOXY)CARBONYL]-L-ASPARTIC ACID
4
PEG
3
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
6
ZN
1
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:138 , GLU A:177 , ASP A:185 , GLU A:187 , GLU A:190 , HOH A:331
BINDING SITE FOR RESIDUE CA A 317
02
AC2
SOFTWARE
GLU A:177 , ASN A:183 , ASP A:185 , GLU A:190 , HOH A:489 , HOH A:497
BINDING SITE FOR RESIDUE CA A 318
03
AC3
SOFTWARE
ASP A:57 , ASP A:59 , GLN A:61 , HOH A:337 , HOH A:351 , HOH A:359
BINDING SITE FOR RESIDUE CA A 319
04
AC4
SOFTWARE
TYR A:193 , THR A:194 , ILE A:197 , ASP A:200 , HOH A:347 , HOH A:348
BINDING SITE FOR RESIDUE CA A 320
05
AC5
SOFTWARE
HIS A:142 , HIS A:146 , GLU A:166 , NX6 A:999
BINDING SITE FOR RESIDUE ZN A 321
06
AC6
SOFTWARE
THR A:26 , TYR A:27 , TYR A:29 , TYR A:211 , GLY A:212 , ASP A:213 , 0A9 A:323 , HOH A:528 , HOH A:602
BINDING SITE FOR RESIDUE 0A9 A 322
07
AC7
SOFTWARE
ILE A:1 , SER A:25 , TYR A:29 , TYR A:211 , GLY A:212 , 0A9 A:322 , HOH A:541
BINDING SITE FOR RESIDUE 0A9 A 323
08
AC8
SOFTWARE
ASN A:112 , ALA A:113 , LEU A:133 , VAL A:139 , HIS A:142 , GLU A:143 , HIS A:146 , TYR A:157 , GLU A:166 , ILE A:188 , LEU A:202 , HIS A:231 , ZN A:321 , HOH A:491 , HOH A:567
BINDING SITE FOR RESIDUE NX6 A 999
09
AC9
SOFTWARE
GLN A:246 , GLY A:257 , ILE A:258 , GLY A:259 , GLN A:273 , HOH A:467 , HOH A:565 , HOH A:570
BINDING SITE FOR RESIDUE PG4 A 324
10
BC1
SOFTWARE
SER A:65 , ALA A:68 , PRO A:69 , HIS A:105 , ASP A:124 , PRO A:132 , HOH A:511 , HOH A:571
BINDING SITE FOR RESIDUE PEG A 325
11
BC2
SOFTWARE
TRP A:115 , HIS A:146 , TYR A:157 , HOH A:366 , HOH A:506
BINDING SITE FOR RESIDUE PEG A 326
12
BC3
SOFTWARE
ILE A:1 , ASN A:33 , GLY A:36 , ASN A:37 , SER A:198
BINDING SITE FOR RESIDUE PEG A 327
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:139-148)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
THER_BACTH
371-380
1
A:139-148
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3qh5a_ (A:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Thermolysin-like
(130)
Protein domain
:
Thermolysin
(121)
Bacillus thermoproteolyticus [TaxId: 1427]
(121)
1a
d3qh5a_
A:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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