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3QH0
Asym. Unit
Info
Asym.Unit (339 KB)
Biol.Unit 1 (324 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF PALMITIC ACID BOUND TO THE CYCLOOXYGENASE CHANNEL OF CYCLOOXYGENASE-2
Authors
:
A. J. Vecchio, M. G. Malkowski
Date
:
25 Jan 11 (Deposition) - 13 Apr 11 (Release) - 08 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Biological Dimer, Oxidoreductase, N-Glycosylation, Monotopic Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Dong, A. J. Vecchio, N. P. Sharma, B. J. Jurban, M. G. Malkowski, W. L. Smith
Human Cyclooxygenase-2 Is A Sequence Homodimer That Functions As A Conformational Heterodimer.
J. Biol. Chem. V. 286 19035 2011
[
close entry info
]
Hetero Components
(9, 40)
Info
All Hetero Components
1a: ACRYLIC ACID (AKRa)
1b: ACRYLIC ACID (AKRb)
2a: B-OCTYLGLUCOSIDE (BOGa)
3a: PROTOPORPHYRIN IX CONTAINING CO (COHa)
3b: PROTOPORPHYRIN IX CONTAINING CO (COHb)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
4g: 1,2-ETHANEDIOL (EDOg)
4h: 1,2-ETHANEDIOL (EDOh)
4i: 1,2-ETHANEDIOL (EDOi)
4j: 1,2-ETHANEDIOL (EDOj)
4k: 1,2-ETHANEDIOL (EDOk)
4l: 1,2-ETHANEDIOL (EDOl)
4m: 1,2-ETHANEDIOL (EDOm)
4n: 1,2-ETHANEDIOL (EDOn)
4o: 1,2-ETHANEDIOL (EDOo)
4p: 1,2-ETHANEDIOL (EDOp)
4q: 1,2-ETHANEDIOL (EDOq)
4r: 1,2-ETHANEDIOL (EDOr)
4s: 1,2-ETHANEDIOL (EDOs)
4t: 1,2-ETHANEDIOL (EDOt)
4u: 1,2-ETHANEDIOL (EDOu)
4v: 1,2-ETHANEDIOL (EDOv)
4w: 1,2-ETHANEDIOL (EDOw)
5a: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-L-ID... (HSQa)
6a: ALPHA-D-MANNOSE (MANa)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7h: N-ACETYL-D-GLUCOSAMINE (NAGh)
8a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
9a: PALMITIC ACID (PLMa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AKR
2
Ligand/Ion
ACRYLIC ACID
2
BOG
1
Ligand/Ion
B-OCTYLGLUCOSIDE
3
COH
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING CO
4
EDO
23
Ligand/Ion
1,2-ETHANEDIOL
5
HSQ
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-ALPHA-L-IDOPYRANOSE
6
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
7
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
9
PLM
1
Ligand/Ion
PALMITIC ACID
[
close Hetero Component info
]
Sites
(40, 40)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:90 , GLN A:192 , LEU A:352 , ARG A:513 , ALA A:516 , ILE A:517 , PHE A:518 , VAL A:523
BINDING SITE FOR RESIDUE EDO A 1
02
AC2
SOFTWARE
PRO A:162 , MET A:163 , SER A:455 , ARG A:456 , LYS A:459 , TYR A:460 , EDO A:623 , HOH A:743
BINDING SITE FOR RESIDUE EDO A 4
03
AC3
SOFTWARE
CYS A:59 , HOH A:892
BINDING SITE FOR RESIDUE EDO A 5
04
AC4
SOFTWARE
GLU A:308 , ARG A:311 , GLU A:339 , SER A:566 , LEU A:567 , ASN A:570 , ASN A:571 , HOH A:737
BINDING SITE FOR RESIDUE EDO A 619
05
AC5
SOFTWARE
LYS A:251 , TYR A:254 , ASN A:310 , HOH A:688 , HOH A:744
BINDING SITE FOR RESIDUE EDO A 620
06
AC6
SOFTWARE
LEU A:246 , LYS A:253 , TYR A:254 , HOH A:959
BINDING SITE FOR RESIDUE EDO A 621
07
AC7
SOFTWARE
SER A:143 , EDO A:624 , HOH A:793 , LEU B:145 , LEU B:224
BINDING SITE FOR RESIDUE EDO A 622
08
AC8
SOFTWARE
EDO A:4 , VAL A:155 , ALA A:156 , ASP A:157 , CYS A:159 , THR A:161 , PRO A:162 , LYS A:459
BINDING SITE FOR RESIDUE EDO A 623
09
AC9
SOFTWARE
EDO A:622 , HOH B:899 , HOH B:926
BINDING SITE FOR RESIDUE EDO A 624
10
BC1
SOFTWARE
VAL A:116 , ARG A:120 , PHE A:205 , TYR A:348 , VAL A:349 , SER A:353 , TYR A:355 , TYR A:385 , ALA A:527 , SER A:530 , LEU A:531 , HOH A:1048
BINDING SITE FOR RESIDUE PLM A 625
11
BC2
SOFTWARE
SER A:477 , PHE A:478 , GLU A:479 , LYS A:492
BINDING SITE FOR RESIDUE AKR A 2
12
BC3
SOFTWARE
THR A:237 , ASP A:239 , ARG A:240 , LYS A:243 , GLU A:272
BINDING SITE FOR RESIDUE AKR A 3
13
BC4
SOFTWARE
GLN A:203 , HIS A:207 , PHE A:210 , LYS A:211 , THR A:212 , HIS A:214 , ASN A:382 , TYR A:385 , HIS A:386 , TRP A:387 , HIS A:388 , LEU A:391 , VAL A:447
BINDING SITE FOR RESIDUE COH A 626
14
BC5
SOFTWARE
TYR A:55 , GLU A:67 , ASN A:68 , NAG A:662
BINDING SITE FOR RESIDUE HSQ A 661
15
BC6
SOFTWARE
HSQ A:661
BINDING SITE FOR RESIDUE NAG A 662
16
BC7
SOFTWARE
GLU A:140 , ASN A:144 , TYR A:147 , ARG A:216 , NAG A:672 , HOH A:706 , HOH A:790 , HOH A:906 , HOH A:943
BINDING SITE FOR RESIDUE NAG A 671
17
BC8
SOFTWARE
ARG A:216 , NAG A:671 , MAN A:673
BINDING SITE FOR RESIDUE NAG A 672
18
BC9
SOFTWARE
NAG A:672 , HOH A:685 , HOH A:853
BINDING SITE FOR RESIDUE MAN A 673
19
CC1
SOFTWARE
ASN A:410 , SER A:412 , ILE A:413 , GLU A:416
BINDING SITE FOR RESIDUE NAG A 681
20
CC2
SOFTWARE
GLU A:179 , LYS A:180 , ARG A:184 , ARG A:185 , ARG A:438 , GLU A:486 , GLU A:490 , GLU B:179 , ARG B:184 , ARG B:185 , ILE B:442 , GLN B:445
BINDING SITE FOR RESIDUE BOG A 703
21
CC3
SOFTWARE
HIS B:90 , GLN B:192 , LEU B:352 , ARG B:513 , ALA B:516 , ILE B:517 , PHE B:518 , VAL B:523
BINDING SITE FOR RESIDUE EDO B 2
22
CC4
SOFTWARE
LYS B:251 , TYR B:254 , ASN B:310 , HOH B:872 , HOH B:1076
BINDING SITE FOR RESIDUE EDO B 3
23
CC5
SOFTWARE
PRO B:162 , LEU B:171 , ARG B:456 , LYS B:459 , TYR B:460 , HOH B:783
BINDING SITE FOR RESIDUE EDO B 6
24
CC6
SOFTWARE
SER A:548 , MET B:48
BINDING SITE FOR RESIDUE EDO B 7
25
CC7
SOFTWARE
GLU B:308 , ARG B:311 , GLU B:339 , SER B:566 , LEU B:567 , ASN B:570 , HOH B:746
BINDING SITE FOR RESIDUE EDO B 8
26
CC8
SOFTWARE
LEU A:145 , HOH A:891 , SER B:143 , HOH B:631 , HOH B:683
BINDING SITE FOR RESIDUE EDO B 9
27
CC9
SOFTWARE
ASP B:239 , ARG B:240 , LYS B:243 , GLN B:270 , VAL B:271 , GLU B:272
BINDING SITE FOR RESIDUE EDO B 619
28
DC1
SOFTWARE
ARG B:428 , VAL B:582 , HOH B:753
BINDING SITE FOR RESIDUE EDO B 620
29
DC2
SOFTWARE
LYS B:175 , GLN B:445 , ALA B:446 , LYS B:449 , HOH B:654 , HOH B:764 , HOH B:880
BINDING SITE FOR RESIDUE EDO B 621
30
DC3
SOFTWARE
VAL B:349 , TYR B:355 , HOH B:1078
BINDING SITE FOR RESIDUE EDO B 622
31
DC4
SOFTWARE
SER B:530 , HOH B:1078
BINDING SITE FOR RESIDUE EDO B 623
32
DC5
SOFTWARE
VAL A:554 , LEU B:246 , LYS B:253 , TYR B:254 , HOH B:635
BINDING SITE FOR RESIDUE EDO B 624
33
DC6
SOFTWARE
PHE A:142 , GLY B:225 , HIS B:226 , ASN B:375 , GLY B:536 , PRO B:538 , HOH B:684 , HOH B:926
BINDING SITE FOR RESIDUE EDO B 625
34
DC7
SOFTWARE
CYS B:569 , ASN B:570
BINDING SITE FOR RESIDUE EDO B 626
35
DC8
SOFTWARE
ALA B:199 , GLN B:203 , HIS B:207 , PHE B:210 , THR B:212 , HIS B:214 , VAL B:295 , ASN B:382 , TYR B:385 , HIS B:386 , HIS B:388 , LEU B:391 , VAL B:447 , HOH B:864
BINDING SITE FOR RESIDUE COH B 627
36
DC9
SOFTWARE
TYR B:55 , GLU B:67 , ASN B:68 , NDG B:662 , HOH B:933
BINDING SITE FOR RESIDUE NAG B 661
37
EC1
SOFTWARE
NAG B:661 , HOH B:906
BINDING SITE FOR RESIDUE NDG B 662
38
EC2
SOFTWARE
GLU B:140 , ASN B:144 , TYR B:147 , ARG B:216 , HOH B:670 , NAG B:672 , HOH B:775 , HOH B:825 , HOH B:833
BINDING SITE FOR RESIDUE NAG B 671
39
EC3
SOFTWARE
ASP A:239 , ARG B:216 , NAG B:671 , HOH B:919 , HOH B:1055
BINDING SITE FOR RESIDUE NAG B 672
40
EC4
SOFTWARE
ASN B:410 , ILE B:413 , GLU B:416 , HOH B:765 , HOH B:866 , HOH B:1007
BINDING SITE FOR RESIDUE NAG B 681
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (A:110-583,B:110-582)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH2_MOUSE
96-598
2
A:110-583
B:110-582
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_An_peroxidase_3qh0B01 (B:218-582)
1b: PFAM_An_peroxidase_3qh0B02 (B:218-582)
1c: PFAM_An_peroxidase_3qh0B03 (B:218-582)
1d: PFAM_An_peroxidase_3qh0B04 (B:218-582)
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Clans
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(
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(
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(
)
(
)
Clan
:
no clan defined [family: An_peroxidase]
(45)
Family
:
An_peroxidase
(45)
Mus musculus (Mouse)
(11)
1a
An_peroxidase-3qh0B01
B:218-582
1b
An_peroxidase-3qh0B02
B:218-582
1c
An_peroxidase-3qh0B03
B:218-582
1d
An_peroxidase-3qh0B04
B:218-582
[
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Asym.Unit (339 KB)
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