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3QGI
Asym. Unit
Info
Asym.Unit (108 KB)
Biol.Unit 1 (102 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HEPATITIS C VIRUS NS5B RNA-DEPENDENT RNA POLYMERASE GENOTYPE 1A COMPLEX WITH N-[(2S)-BUTAN-2-YL]-6-[(3R)-3-{[4-(TRIFLUOROMETHOXY)BENZYL]CARBAMOYL}-4-{[4-(TRIFLUOROMETHOXY) PHENYL]SULFONYL}PIPERAZIN-1-YL]PYRIDAZINE-3-CARBOXAMIDE
Authors
:
S. Sheriff
Date
:
24 Jan 11 (Deposition) - 20 Apr 11 (Release) - 20 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ns5B, Polymerase, Hcv, Fingers, Palm, Thumb, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. G. Gentles, S. Sheriff, B. R. Beno, C. Wan, K. Kish, M. Ding, X. Zheng, L. Chupak, M. A. Poss, M. R. Witmer, P. Morin, Y. K. Wang, K. Rigat, J. Lemm, S. Voss, M. Liu, L. Pelosi, S. B. Roberts, M. Gao, J. F. Kadow
Investigation Of The Mode Of Binding Of A Novel Series Of N-Benzyl-4-Heteroaryl-1-(Phenylsulfonyl)Piperazine-2- Carboxamides To The Hepatitis C Virus Polymerase.
Bioorg. Med. Chem. Lett. V. 21 2212 2011
[
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: N-[(2S)-BUTAN-2-YL]-6-[(3R)-3-{[4-... (33Fa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
33F
1
Ligand/Ion
N-[(2S)-BUTAN-2-YL]-6-[(3R)-3-{[4-(TRIFLUOROMETHOXY)BENZYL]CARBAMOYL}-4-{[4-(TRIFLUOROMETHOXY)PHENYL]SULFONYL}PIPERAZIN-1-YL]PYRIDAZINE-3-CARBOXAMIDE
2
GOL
14
Ligand/Ion
GLYCEROL
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:179 , TYR A:191 , GLY A:192 , PHE A:193 , TYR A:195 , SER A:196 , PRO A:197 , ARG A:200 , SER A:288 , SER A:368 , LEU A:384 , ILE A:413 , MET A:414 , PHE A:415 , ILE A:447 , TYR A:448 , ALA A:450 , TYR A:452 , ILE A:454 , ILE A:462 , LEU A:547 , PHE A:551 , TYR A:555 , HOH A:1030 , HOH A:1109
BINDING SITE FOR RESIDUE 33F A 601
02
AC2
SOFTWARE
LEU A:26 , ALA A:435 , ARG A:436 , HOH A:850
BINDING SITE FOR RESIDUE GOL A 651
03
AC3
SOFTWARE
ARG A:304 , ALA A:305 , GLY A:307 , GLU A:361 , VAL A:372 , ARG A:380 , SER A:478 , HOH A:880 , HOH A:934 , HOH A:1085 , HOH A:1153 , HOH A:1236
BINDING SITE FOR RESIDUE GOL A 652
04
AC4
SOFTWARE
SER A:407 , GLY A:410 , ASN A:411 , GLU A:446 , HOH A:891
BINDING SITE FOR RESIDUE GOL A 653
05
AC5
SOFTWARE
GLU A:361 , ASN A:369 , SER A:371 , THR A:385 , SER A:478 , GLY A:480 , GLU A:481 , ARG A:484 , HOH A:880 , HOH A:1080 , HOH A:1157
BINDING SITE FOR RESIDUE GOL A 654
06
AC6
SOFTWARE
ARG A:278 , ASP A:458 , TRP A:550 , PHE A:551 , HOH A:829 , HOH A:927 , HOH A:977 , HOH A:989 , HOH A:1004
BINDING SITE FOR RESIDUE GOL A 655
07
AC7
SOFTWARE
SER A:29 , ASP A:244 , ARG A:250 , PRO A:495 , ARG A:503 , HOH A:902
BINDING SITE FOR RESIDUE GOL A 656
08
AC8
SOFTWARE
ARG A:32 , HIS A:33 , GLU A:237 , GLN A:241 , LYS A:254 , HOH A:877 , HOH A:942
BINDING SITE FOR RESIDUE GOL A 657
09
AC9
SOFTWARE
GLU A:398 , ASN A:406 , TRP A:408 , ARG A:436 , GLN A:438 , HOH A:779
BINDING SITE FOR RESIDUE GOL A 658
10
BC1
SOFTWARE
MET A:423 , ARG A:498 , ARG A:501 , GOL A:664 , HOH A:1220
BINDING SITE FOR RESIDUE GOL A 659
11
BC2
SOFTWARE
TYR A:524 , THR A:537 , PRO A:538 , ILE A:539 , ALA A:540 , HOH A:796 , HOH A:798
BINDING SITE FOR RESIDUE GOL A 660
12
BC3
SOFTWARE
LEU A:91 , TYR A:176 , ALA A:450 , GLY A:554 , TYR A:555 , HOH A:836 , HOH A:1107
BINDING SITE FOR RESIDUE GOL A 661
13
BC4
SOFTWARE
SER A:39 , ASN A:142 , GLU A:143 , VAL A:144 , TRP A:397 , HOH A:1127
BINDING SITE FOR RESIDUE GOL A 662
14
BC5
SOFTWARE
ALA A:327 , GLY A:328 , ASN A:483 , ALA A:486 , ARG A:490 , HOH A:909 , HOH A:1069
BINDING SITE FOR RESIDUE GOL A 663
15
BC6
SOFTWARE
LEU A:474 , HIS A:475 , TYR A:477 , ARG A:501 , TRP A:528 , GOL A:659 , HOH A:740
BINDING SITE FOR RESIDUE GOL A 664
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RDRP_SSRNA_POS (A:214-332)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RDRP_SSRNA_POS
PS50507
RdRp of positive ssRNA viruses catalytic domain profile.
POLG_HCV1
2634-2752
1
A:214-332
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3qgia_ (A:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
Viral RNA polymerase
(148)
Hepatitis c virus subtype 1a [TaxId: 31646]
(4)
1a
d3qgia_
A:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_RdRP_3_3qgiA01 (A:3-514)
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Clans
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(
)
(
)
Clan
:
RdRP
(210)
Family
:
RdRP_3
(43)
Hepatitis C virus
(7)
1a
RdRP_3-3qgiA01
A:3-514
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (108 KB)
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