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3QEL
Asym. Unit
Info
Asym.Unit (454 KB)
Biol.Unit 1 (336 KB)
Biol.Unit 2 (331 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AMINO TERMINAL DOMAINS OF THE NMDA RECEPTOR SUBUNIT GLUN1 AND GLUN2B IN COMPLEX WITH IFENPRODIL
Authors
:
E. Karakas, N. Simorowski, H. Furukawa
Date
:
20 Jan 11 (Deposition) - 15 Jun 11 (Release) - 12 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,D (1x)
Biol. Unit 2: B,C,D (1x)
Keywords
:
Ion Channel, Nmda Receptor, Allosteric Modulation, Phenylethanolamine, N-Glycosylation, Extracellular, Transmembrane, Transport Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
E. Karakas, N. Simorowski, H. Furukawa
Subunit Arrangement And Phenylethanolamine Binding In Glun1/Glun2B Nmda Receptors.
Nature V. 475 249 2011
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Hetero Components
(6, 16)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: ALPHA-L-FUCOSE (FUCa)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
6a: 4-[(1R,2S)-2-(4-BENZYLPIPERIDIN-1-... (QELa)
6b: 4-[(1R,2S)-2-(4-BENZYLPIPERIDIN-1-... (QELb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
NA
2
Ligand/Ion
SODIUM ION
5
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
QEL
2
Ligand/Ion
4-[(1R,2S)-2-(4-BENZYLPIPERIDIN-1-YL)-1-HYDROXYPROPYL]PHENOL
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:137 , ASP A:364 , HOH A:440 , HOH A:441 , HOH A:458
BINDING SITE FOR RESIDUE NA A 501
02
AC2
SOFTWARE
ASN A:297 , SER A:299 , ALA A:300 , HOH A:454 , MAN A:506
BINDING SITE FOR RESIDUE NAG A 502
03
AC3
SOFTWARE
LYS A:51 , GLN A:371 , ASN A:389 , TYR A:392 , HOH A:431 , NAG A:504 , FUC A:508
BINDING SITE FOR RESIDUE NAG A 503
04
AC4
SOFTWARE
GLU A:44 , GLN A:48 , NAG A:503 , BMA A:505 , MAN A:506 , FUC A:508
BINDING SITE FOR RESIDUE NAG A 504
05
AC5
SOFTWARE
GLN A:40 , GLU A:44 , NAG A:504 , MAN A:506 , MAN A:507
BINDING SITE FOR RESIDUE BMA A 505
06
AC6
SOFTWARE
ILE A:41 , GLN A:48 , SER A:303 , HOH A:454 , NAG A:502 , NAG A:504 , BMA A:505
BINDING SITE FOR RESIDUE MAN A 506
07
AC7
SOFTWARE
GLN A:40 , BMA A:505
BINDING SITE FOR RESIDUE MAN A 507
08
AC8
SOFTWARE
NAG A:503 , NAG A:504
BINDING SITE FOR RESIDUE FUC A 508
09
AC9
SOFTWARE
ASN B:74
BINDING SITE FOR RESIDUE NAG B 501
10
BC1
SOFTWARE
ASN B:341
BINDING SITE FOR RESIDUE NAG B 502
11
BC2
SOFTWARE
TYR A:109 , THR A:110 , SER A:132 , ILE A:133 , LEU A:135 , GLN B:110 , PHE B:176 , PRO B:177 , GLU B:236 , HOH B:415
BINDING SITE FOR RESIDUE QEL B 1
12
BC3
SOFTWARE
PHE C:137 , ASP C:364 , GLY C:365 , HOH C:423 , HOH C:424 , HOH C:425
BINDING SITE FOR RESIDUE NA C 501
13
BC4
SOFTWARE
ASN C:297 , SER C:299 , ALA C:300 , VAL C:355
BINDING SITE FOR RESIDUE NAG C 502
14
BC5
SOFTWARE
ASN D:74
BINDING SITE FOR RESIDUE NAG D 501
15
BC6
SOFTWARE
ASN D:341
BINDING SITE FOR RESIDUE NAG D 502
16
BC7
SOFTWARE
TYR C:109 , SER C:132 , ILE C:133 , GLN D:110 , ILE D:111 , PHE D:114 , PHE D:176 , PRO D:177 , GLU D:236 , HOH D:406
BINDING SITE FOR RESIDUE QEL D 2
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_ANF_receptor_3qelD01 (D:66-320)
1b: PFAM_ANF_receptor_3qelD02 (D:66-320)
2a: PFAM_ANF_receptor_3qelC01 (C:37-378)
2b: PFAM_ANF_receptor_3qelC02 (C:37-378)
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Clan
:
Periplas_BP
(97)
Family
:
ANF_receptor
(21)
Rattus norvegicus (Rat)
(13)
1a
ANF_receptor-3qelD01
D:66-320
1b
ANF_receptor-3qelD02
D:66-320
Xenopus laevis (African clawed frog)
(3)
2a
ANF_receptor-3qelC01
C:37-378
2b
ANF_receptor-3qelC02
C:37-378
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Asymmetric Unit 1
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Asym.Unit (454 KB)
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