PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3QE0
Asym. Unit
Info
Asym.Unit (341 KB)
Biol.Unit 1 (113 KB)
Biol.Unit 2 (117 KB)
Biol.Unit 3 (109 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
A GALPHA-I1 P-LOOP MUTATION PREVENTS TRANSITION TO THE ACTIVATED STATE
Authors
:
D. E. Bosch, F. S. Willard, A. J. Kimple, M. J. Miley, D. P. Siderovski
Date
:
19 Jan 11 (Deposition) - 25 Jan 12 (Release) - 14 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,F,G
Biol. Unit 1: A,F (1x)
Biol. Unit 2: B,G (1x)
Biol. Unit 3: C (1x)
Keywords
:
Kb752, Ras-Like Domain, All-Helical Domain, Arginine Finger, Signaling Protein, Lipoprotein, Transducer, Gtpase Activity, Gtp Binding, Nucleotide Binding, Adp-Ribosylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. E. Bosch, F. S. Willard, R. Ramanujam, A. J. Kimple, M. D. Willard, N. I. Naqvi, D. P. Siderovski
A P-Loop Mutation In Galpha Subunits Prevents Transition To The Active State: Implications For G-Protein Signaling In Fungal Pathogenesis
Plos Pathog. V. 8 02553 2012
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 6)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
1c: GUANOSINE-5'-DIPHOSPHATE (GDPc)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
3
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
MG
3
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:47 , THR A:181 , GDP A:555
BINDING SITE FOR RESIDUE MG A 556
2
AC2
SOFTWARE
HOH A:7 , ARG A:42 , GLU A:43 , SER A:44 , GLY A:45 , LYS A:46 , SER A:47 , THR A:48 , SER A:151 , LEU A:175 , ARG A:176 , THR A:177 , ARG A:178 , ASN A:269 , LYS A:270 , ASP A:272 , LEU A:273 , CYS A:325 , ALA A:326 , THR A:327 , MG A:556
BINDING SITE FOR RESIDUE GDP A 555
3
AC3
SOFTWARE
SER B:47 , GDP B:355
BINDING SITE FOR RESIDUE MG B 556
4
AC4
SOFTWARE
GLU B:43 , SER B:44 , GLY B:45 , LYS B:46 , SER B:47 , THR B:48 , SER B:151 , LEU B:175 , ARG B:176 , THR B:177 , ARG B:178 , ASN B:269 , LYS B:270 , ASP B:272 , LEU B:273 , CYS B:325 , ALA B:326 , THR B:327 , MG B:556
BINDING SITE FOR RESIDUE GDP B 355
5
AC5
SOFTWARE
SER C:47 , VAL C:179 , THR C:181 , GDP C:551
BINDING SITE FOR RESIDUE MG C 552
6
AC6
SOFTWARE
ALA C:41 , ARG C:42 , GLU C:43 , SER C:44 , GLY C:45 , LYS C:46 , SER C:47 , THR C:48 , SER C:151 , LEU C:175 , ARG C:176 , THR C:177 , ARG C:178 , ASN C:269 , LYS C:270 , ASP C:272 , LEU C:273 , CYS C:325 , ALA C:326 , THR C:327 , MG C:552
BINDING SITE FOR RESIDUE GDP C 551
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(8, 24)
Info
All Exons
Exon 1.4a (A:32-40 | B:32-40 | C:34-40)
Exon 1.8 (A:40-54 | B:40-54 | C:40-54)
Exon 1.9b (A:54-101 | B:54-101 | C:54-101)
Exon 1.10 (A:102-154 (gaps) | B:102-154 (gaps...)
Exon 1.11 (A:154-197 | B:154-197 | C:154-197)
Exon 1.12 (A:197-240 (gaps) | B:197-240 | C:1...)
Exon 1.13 (A:241-292 | B:241-292 | C:241-292)
Exon 1.14b (A:292-354 | B:292-347 | C:292-347)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.4a
2: Boundary 1.4a/1.8
3: Boundary 1.8/1.9b
4: Boundary 1.9b/1.10
5: Boundary 1.10/1.11
6: Boundary 1.11/1.12
7: Boundary 1.12/1.13
8: Boundary 1.13/1.14b
9: Boundary 1.14b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000351004
4a
ENSE00001371927
chr7:
79764104-79764594
491
GNAI1_HUMAN
1-40
40
3
A:32-40
B:32-40
C:34-40
9
9
7
1.8
ENST00000351004
8
ENSE00001626524
chr7:
79818267-79818309
43
GNAI1_HUMAN
40-54
15
3
A:40-54
B:40-54
C:40-54
15
15
15
1.9b
ENST00000351004
9b
ENSE00001129655
chr7:
79818406-79818547
142
GNAI1_HUMAN
54-101
48
3
A:54-101
B:54-101
C:54-101
48
48
48
1.10
ENST00000351004
10
ENSE00000877050
chr7:
79828541-79828698
158
GNAI1_HUMAN
102-154
53
3
A:102-154 (gaps)
B:102-154 (gaps)
C:102-154 (gaps)
53
53
53
1.11
ENST00000351004
11
ENSE00002174891
chr7:
79833020-79833148
129
GNAI1_HUMAN
154-197
44
3
A:154-197
B:154-197
C:154-197
44
44
44
1.12
ENST00000351004
12
ENSE00001369917
chr7:
79840285-79840414
130
GNAI1_HUMAN
197-240
44
3
A:197-240 (gaps)
B:197-240
C:197-240 (gaps)
44
44
44
1.13
ENST00000351004
13
ENSE00001591517
chr7:
79842032-79842185
154
GNAI1_HUMAN
241-292
52
3
A:241-292
B:241-292
C:241-292
52
52
52
1.14b
ENST00000351004
14b
ENSE00001303419
chr7:
79846619-79848718
2100
GNAI1_HUMAN
292-354
63
3
A:292-354
B:292-347
C:292-347
63
56
56
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain F
Chain G
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (341 KB)
Header - Asym.Unit
Biol.Unit 1 (113 KB)
Header - Biol.Unit 1
Biol.Unit 2 (117 KB)
Header - Biol.Unit 2
Biol.Unit 3 (109 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3QE0
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help