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3QD5
Biol. Unit 2
Info
Asym.Unit (108 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (203 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE RIBOSE-5-PHOSPHATE ISOMERASE FROM COCCIDIOIDES IMMITIS SOLVED BY COMBINED IODIDE ION SAD AND MR
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
17 Jan 11 (Deposition) - 09 Feb 11 (Release) - 26 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Coccidioidomycosis, Putative Uncharacterized Protein, Hypothetical Protein, Ribose-5-Phosphate Isomerase, Iodide Ion, Isomerase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. E. Edwards, A. B. Abramov, E. R. Smith, R. O. Baydo, J. T. Leonard, D. J. Leibly, K. B. Thompkins, M. C. Clifton, A. S. Gardberg, B. L. Staker, W. C. Van Voorhis, P. J. Myler, L. J. Stewart
Structural Characterization Of A Ribose-5-Phosphate Isomerase B From The Pathogenic Fungus Coccidioides Immitis
Bmc Struct. Biol. V. 11 39 2011
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Hetero Components
(3, 66)
Info
All Hetero Components
1a: S-HYDROXYCYSTEINE (CSOa)
1b: S-HYDROXYCYSTEINE (CSOb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
3a: IODIDE ION (IODa)
3aa: IODIDE ION (IODaa)
3ab: IODIDE ION (IODab)
3ac: IODIDE ION (IODac)
3b: IODIDE ION (IODb)
3c: IODIDE ION (IODc)
3d: IODIDE ION (IODd)
3e: IODIDE ION (IODe)
3f: IODIDE ION (IODf)
3g: IODIDE ION (IODg)
3h: IODIDE ION (IODh)
3i: IODIDE ION (IODi)
3j: IODIDE ION (IODj)
3k: IODIDE ION (IODk)
3l: IODIDE ION (IODl)
3m: IODIDE ION (IODm)
3n: IODIDE ION (IODn)
3o: IODIDE ION (IODo)
3p: IODIDE ION (IODp)
3q: IODIDE ION (IODq)
3r: IODIDE ION (IODr)
3s: IODIDE ION (IODs)
3t: IODIDE ION (IODt)
3u: IODIDE ION (IODu)
3v: IODIDE ION (IODv)
3w: IODIDE ION (IODw)
3x: IODIDE ION (IODx)
3y: IODIDE ION (IODy)
3z: IODIDE ION (IODz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSO
4
Mod. Amino Acid
S-HYDROXYCYSTEINE
2
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
3
IOD
58
Ligand/Ion
IODIDE ION
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:71 , ASP A:111 , ALA A:112 , HOH A:205 , HOH A:256
BINDING SITE FOR RESIDUE EDO A 164
02
AC2
SOFTWARE
ARG B:71 , ASP B:111 , ALA B:112 , HOH B:212 , HOH B:264
BINDING SITE FOR RESIDUE EDO B 164
03
AC3
SOFTWARE
IOD A:166 , HOH A:241
BINDING SITE FOR RESIDUE IOD A 165
04
AC4
SOFTWARE
IOD A:165
BINDING SITE FOR RESIDUE IOD A 166
05
AC5
SOFTWARE
IOD A:168 , HOH B:182
BINDING SITE FOR RESIDUE IOD A 167
06
AC6
SOFTWARE
ARG A:138 , IOD A:167
BINDING SITE FOR RESIDUE IOD A 168
07
AC7
SOFTWARE
CSO A:76 , THR A:78 , GLY A:81 , HOH A:195
BINDING SITE FOR RESIDUE IOD A 169
08
AC8
SOFTWARE
IOD A:171
BINDING SITE FOR RESIDUE IOD A 170
09
AC9
SOFTWARE
GLY A:77 , ARG A:120 , IOD A:170 , HOH A:278
BINDING SITE FOR RESIDUE IOD A 171
10
BC1
SOFTWARE
ALA A:52 , ALA B:151
BINDING SITE FOR RESIDUE IOD A 174
11
BC2
SOFTWARE
GLN A:62 , TYR B:155
BINDING SITE FOR RESIDUE IOD A 175
12
BC3
SOFTWARE
ASP A:99 , THR A:100
BINDING SITE FOR RESIDUE IOD A 176
13
BC4
SOFTWARE
HOH A:243 , ARG B:120
BINDING SITE FOR RESIDUE IOD B 165
14
BC5
SOFTWARE
IOD B:180
BINDING SITE FOR RESIDUE IOD B 166
15
BC6
SOFTWARE
TYR A:155 , SER B:46 , HOH B:202 , HOH B:214
BINDING SITE FOR RESIDUE IOD B 172
16
BC7
SOFTWARE
ALA B:52 , HIS B:55
BINDING SITE FOR RESIDUE IOD B 174
17
BC8
SOFTWARE
ASP B:99 , THR B:100
BINDING SITE FOR RESIDUE IOD B 175
18
BC9
SOFTWARE
HIS B:29 , HOH B:253 , HOH B:255
BINDING SITE FOR RESIDUE IOD B 176
19
CC1
SOFTWARE
GLN B:141 , LYS B:142
BINDING SITE FOR RESIDUE IOD B 177
20
CC2
SOFTWARE
HOH B:191
BINDING SITE FOR RESIDUE IOD B 179
21
CC3
SOFTWARE
IOD B:166 , HOH B:197
BINDING SITE FOR RESIDUE IOD B 180
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Sorry, no Info available
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Exons
(0, 0)
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3qd5a_ (A:)
1b: SCOP_d3qd5b_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribose/Galactose isomerase RpiB/AlsB
(27)
Superfamily
:
Ribose/Galactose isomerase RpiB/AlsB
(27)
Family
:
automated matches
(15)
Protein domain
:
automated matches
(15)
Coccidioides immitis [TaxId: 246410]
(3)
1a
d3qd5a_
A:
1b
d3qd5b_
B:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (108 KB)
Header - Asym.Unit
Biol.Unit 1 (102 KB)
Header - Biol.Unit 1
Biol.Unit 2 (203 KB)
Header - Biol.Unit 2
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