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3QAZ
Biol. Unit 12
Info
Asym.Unit (2.2 MB)
Biol.Unit 1 (194 KB)
Biol.Unit 10 (195 KB)
Biol.Unit 11 (192 KB)
Biol.Unit 12 (197 KB)
Biol.Unit 2 (194 KB)
Biol.Unit 3 (195 KB)
Biol.Unit 4 (187 KB)
Biol.Unit 5 (195 KB)
Biol.Unit 6 (194 KB)
Biol.Unit 7 (195 KB)
Biol.Unit 8 (196 KB)
Biol.Unit 9 (196 KB)
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Title
:
IL-2 MUTANT D10 TERNARY COMPLEX
Authors
:
A. M. Levin, D. L. Bates, A. M. Ring, J. T. Lin, L. Su, C. Krieg, G. R. Bowman P. Novick, V. S. Pande, H. E. Khort, O. Boyman, C. G. Gathman, K. C. Garci
Date
:
12 Jan 11 (Deposition) - 11 Apr 12 (Release) - 15 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Biol. Unit 5: M,N,O (1x)
Biol. Unit 6: P,Q,R (1x)
Biol. Unit 7: S,T,U (1x)
Biol. Unit 8: V,W,X (1x)
Biol. Unit 9: Y,Z,a (1x)
Biol. Unit 10: b,c,d (1x)
Biol. Unit 11: e,f,g (1x)
Biol. Unit 12: h,i,j (1x)
Keywords
:
Cytokine Receptor Signaling Complex, Signaling Protein-Cytokine Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. M. Levin, D. L. Bates, A. M. Ring, C. Krieg, J. T. Lin, L. Su, I. Moraga, M. E. Raeber, G. R. Bowman, P. Novick, V. S. Pande, C. G. Fathman, O. Boyman, K. C. Garcia
Exploiting A Natural Conformational Switch To Engineer An Interleukin-2 'Superkine'
Nature V. 484 529 2012
[
close entry info
]
Hetero Components
(1, 3)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
1ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
1ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
1ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
1ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
1af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
1ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
1ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
1ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
1aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
1ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
1al: N-ACETYL-D-GLUCOSAMINE (NAGal)
1am: N-ACETYL-D-GLUCOSAMINE (NAGam)
1an: N-ACETYL-D-GLUCOSAMINE (NAGan)
1ao: N-ACETYL-D-GLUCOSAMINE (NAGao)
1ap: N-ACETYL-D-GLUCOSAMINE (NAGap)
1aq: N-ACETYL-D-GLUCOSAMINE (NAGaq)
1ar: N-ACETYL-D-GLUCOSAMINE (NAGar)
1as: N-ACETYL-D-GLUCOSAMINE (NAGas)
1at: N-ACETYL-D-GLUCOSAMINE (NAGat)
1au: N-ACETYL-D-GLUCOSAMINE (NAGau)
1av: N-ACETYL-D-GLUCOSAMINE (NAGav)
1aw: N-ACETYL-D-GLUCOSAMINE (NAGaw)
1ax: N-ACETYL-D-GLUCOSAMINE (NAGax)
1ay: N-ACETYL-D-GLUCOSAMINE (NAGay)
1az: N-ACETYL-D-GLUCOSAMINE (NAGaz)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1ba: N-ACETYL-D-GLUCOSAMINE (NAGba)
1bb: N-ACETYL-D-GLUCOSAMINE (NAGbb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
1k: N-ACETYL-D-GLUCOSAMINE (NAGk)
1l: N-ACETYL-D-GLUCOSAMINE (NAGl)
1m: N-ACETYL-D-GLUCOSAMINE (NAGm)
1n: N-ACETYL-D-GLUCOSAMINE (NAGn)
1o: N-ACETYL-D-GLUCOSAMINE (NAGo)
1p: N-ACETYL-D-GLUCOSAMINE (NAGp)
1q: N-ACETYL-D-GLUCOSAMINE (NAGq)
1r: N-ACETYL-D-GLUCOSAMINE (NAGr)
1s: N-ACETYL-D-GLUCOSAMINE (NAGs)
1t: N-ACETYL-D-GLUCOSAMINE (NAGt)
1u: N-ACETYL-D-GLUCOSAMINE (NAGu)
1v: N-ACETYL-D-GLUCOSAMINE (NAGv)
1w: N-ACETYL-D-GLUCOSAMINE (NAGw)
1x: N-ACETYL-D-GLUCOSAMINE (NAGx)
1y: N-ACETYL-D-GLUCOSAMINE (NAGy)
1z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: DC2 (SOFTWARE)
2: FC7 (SOFTWARE)
3: FC8 (SOFTWARE)
4: FC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
DC2
SOFTWARE
ASN O:62 , GLU O:88 , GLN i:113 , GLU i:127
BINDING SITE FOR RESIDUE NAG O 300
2
FC7
SOFTWARE
VAL i:115 , ASN i:123 , TRP i:166 , NAG i:216 , THR j:176
BINDING SITE FOR RESIDUE NAG i 215
3
FC8
SOFTWARE
NAG i:215
BINDING SITE FOR RESIDUE NAG i 216
4
FC9
SOFTWARE
ASN j:62 , GLU j:88
BINDING SITE FOR RESIDUE NAG j 300
[
close Site info
]
SAPs(SNPs)/Variants
(31, 31)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_002669 (C40G, chain j, )
02: VAR_002670 (E46G, chain j, )
03: VAR_002671 (E46K, chain j, )
04: VAR_021994 (S57F, chain i, )
05: VAR_002672 (N62K, chain j, )
06: VAR_002673 (Y67C, chain j, )
07: VAR_002674 (Y83C, chain j, )
08: VAR_020611 (E87K, chain j, )
09: VAR_002675 (G92D, chain j, )
10: VAR_002676 (C93F, chain j, )
11: VAR_002677 (C93R, chain j, )
12: VAR_002678 (H101P, chain j, )
13: VAR_002679 (Y103N, chain j, )
14: VAR_002680 (Q122P, chain j, )
15: VAR_002681 (I131N, chain j, )
16: VAR_002682 (A134V, chain j, )
17: VAR_002683 (L140H, chain j, )
18: VAR_002684 (L150P, chain j, )
19: VAR_002685 (L150Q, chain j, )
20: VAR_002686 (C160R, chain j, )
21: VAR_002687 (L161S, chain j, )
22: VAR_002688 (R200C, chain j, )
23: VAR_002689 (R202W, chain j, )
24: VAR_002690 (R204C, chain j, )
25: VAR_002691 (R204H, chain j, )
26: VAR_002692 (F205C, chain j, )
27: VAR_002693 (L208P, chain j, )
28: VAR_002694 (C209Y, chain j, )
29: VAR_002695 (G210R, chain j, )
30: VAR_002697 (W218C, chain j, )
31: VAR_002698 (S219I, chain j, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_002669
C
62
G
IL2RG_HUMAN
Disease (XSCID)
---
j
C
40
G
02
UniProt
VAR_002670
E
68
G
IL2RG_HUMAN
Disease (XSCID)
---
j
E
46
G
03
UniProt
VAR_002671
E
68
K
IL2RG_HUMAN
Disease (XSCID)
---
j
E
46
K
04
UniProt
VAR_021994
S
83
F
IL2RB_HUMAN
Polymorphism
2228143
i
S
57
F
05
UniProt
VAR_002672
N
84
K
IL2RG_HUMAN
Disease (XSCID)
---
j
N
62
K
06
UniProt
VAR_002673
Y
89
C
IL2RG_HUMAN
Disease (XSCID)
---
j
Y
67
C
07
UniProt
VAR_002674
Y
105
C
IL2RG_HUMAN
Disease (XSCID)
---
j
Y
83
C
08
UniProt
VAR_020611
E
109
K
IL2RG_HUMAN
Polymorphism
17875899
j
E
87
K
09
UniProt
VAR_002675
G
114
D
IL2RG_HUMAN
Disease (XSCID)
---
j
G
92
D
10
UniProt
VAR_002676
C
115
F
IL2RG_HUMAN
Disease (XSCID)
---
j
C
93
F
11
UniProt
VAR_002677
C
115
R
IL2RG_HUMAN
Disease (XSCID)
---
j
C
93
R
12
UniProt
VAR_002678
H
123
P
IL2RG_HUMAN
Disease (XSCID)
---
j
H
101
P
13
UniProt
VAR_002679
Y
125
N
IL2RG_HUMAN
Disease (XSCID)
---
j
Y
103
N
14
UniProt
VAR_002680
Q
144
P
IL2RG_HUMAN
Disease (XSCID)
---
j
Q
122
P
15
UniProt
VAR_002681
I
153
N
IL2RG_HUMAN
Disease (XSCID)
---
j
I
131
N
16
UniProt
VAR_002682
A
156
V
IL2RG_HUMAN
Disease (XSCID)
---
j
A
134
V
17
UniProt
VAR_002683
L
162
H
IL2RG_HUMAN
Disease (XSCID)
---
j
L
140
H
18
UniProt
VAR_002684
L
172
P
IL2RG_HUMAN
Disease (XSCID)
---
j
L
150
P
19
UniProt
VAR_002685
L
172
Q
IL2RG_HUMAN
Disease (XSCID)
---
j
L
150
Q
20
UniProt
VAR_002686
C
182
R
IL2RG_HUMAN
Disease (XSCID)
---
j
C
160
R
21
UniProt
VAR_002687
L
183
S
IL2RG_HUMAN
Disease (XSCID)
---
j
L
161
S
22
UniProt
VAR_002688
R
222
C
IL2RG_HUMAN
Disease (XCID)
---
j
R
200
C
23
UniProt
VAR_002689
R
224
W
IL2RG_HUMAN
Disease (XSCID)
---
j
R
202
W
24
UniProt
VAR_002690
R
226
C
IL2RG_HUMAN
Disease (XSCID)
---
j
R
204
C
25
UniProt
VAR_002691
R
226
H
IL2RG_HUMAN
Disease (XSCID)
---
j
R
204
H
26
UniProt
VAR_002692
F
227
C
IL2RG_HUMAN
Disease (XSCID)
---
j
F
205
C
27
UniProt
VAR_002693
L
230
P
IL2RG_HUMAN
Disease (XSCID)
---
j
L
208
P
28
UniProt
VAR_002694
C
231
Y
IL2RG_HUMAN
Disease (XSCID)
---
j
C
209
Y
29
UniProt
VAR_002695
G
232
R
IL2RG_HUMAN
Disease (XSCID)
---
j
G
210
R
30
UniProt
VAR_002697
W
240
C
IL2RG_HUMAN
Disease (XSCID)
---
j
W
218
C
31
UniProt
VAR_002698
S
241
I
IL2RG_HUMAN
Disease (XSCID)
---
j
S
219
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 5)
Info
All PROSITE Patterns/Profiles
1: INTERLEUKIN_2 (h:51-63)
2: FN3 (j:134-224)
3: HEMATOPO_REC_S_F1 (j:191-224)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INTERLEUKIN_2
PS00424
Interleukin-2 signature.
IL2_HUMAN
71-83
1
-
-
-
-
-
-
-
-
-
-
-
h:51-63
2
FN3
PS50853
Fibronectin type-III domain profile.
IL2RB_HUMAN
134-234
1
-
-
-
-
-
-
-
-
-
-
-
i:108-207
IL2RG_HUMAN
156-253
1
-
-
-
-
-
-
-
-
-
-
-
j:134-224
3
HEMATOPO_REC_S_F1
PS01355
Short hematopoietin receptor family 1 signature.
IL2RB_HUMAN
198-229
1
-
-
-
-
-
-
-
-
-
-
-
i:172-203
IL2RG_HUMAN
213-246
1
-
-
-
-
-
-
-
-
-
-
-
j:191-224
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
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Backbone
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Protein & NOT Site
Protein & NOT PROSITE
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Chain i
Chain j
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (2.2 MB)
Header - Asym.Unit
Biol.Unit 1 (194 KB)
Header - Biol.Unit 1
Biol.Unit 10 (195 KB)
Header - Biol.Unit 10
Biol.Unit 11 (192 KB)
Header - Biol.Unit 11
Biol.Unit 12 (197 KB)
Header - Biol.Unit 12
Biol.Unit 2 (194 KB)
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Biol.Unit 3 (195 KB)
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Biol.Unit 4 (187 KB)
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Biol.Unit 5 (195 KB)
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Biol.Unit 6 (194 KB)
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Biol.Unit 8 (196 KB)
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