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3QAA
Asym. Unit
Info
Asym.Unit (83 KB)
Biol.Unit 1 (78 KB)
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(1)
Title
:
HIV-1 WILD TYPE PROTEASE WITH A SUBSTITUTED BIS-TETRAHYDROFURAN INHIBITOR, GRL-044-10A
Authors
:
Y. -F. Wang, J. Agniswamy, I. T. Weber
Date
:
10 Jan 11 (Deposition) - 21 Dec 11 (Release) - 21 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Aspartic Acid Protease, Hiv-1 Protease Inhibitor Grl-044-10A, Substituted Bis-Tetrahydrofuran Inhibitor, Wild-Type Hiv-1 Protease, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. K. Ghosh, C. D. Martyr, M. Steffey, Y. -F. Wang, J. Agniswamy, S. Miguel, M. Amano, I. T. Weber, H. Mitsuya
Design, Synthesis, And X-Ray Structure Of Substituted Bis-Tetrahydrofuran (Bis-Thf)-Derived Potent Hiv-1 Protease Inhibitors
Acs Med. Chem. Lett. V. 2 298 2011
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: (3R,3AS,4R,6AR)-4-METHOXYHEXAHYDRO... (G04a)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
4a: SODIUM ION (NAa)
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Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
G04
1
Ligand/Ion
(3R,3AS,4R,6AR)-4-METHOXYHEXAHYDROFURO[2,3-B]FURAN-3-YL[(2S,3R)-3-HYDROXY-4-{[(4-METHOXYPHENYL)SULFONYL](2-METHYLPROPYL)AMINO}-1-PHENYLBUTAN-2-YL]CARBAMATE
3
GOL
3
Ligand/Ion
GLYCEROL
4
NA
1
Ligand/Ion
SODIUM ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:25 , GLY A:27 , ALA A:28 , ASP A:29 , ASP A:30 , VAL A:32 , ILE A:47 , GLY A:48 , GLY A:49 , ILE A:50 , PRO A:81 , VAL A:82 , ILE A:84 , HOH A:1002 , HOH A:1095 , HOH A:1096 , HOH A:1105 , ARG B:108 , ASP B:125 , GLY B:127 , ALA B:128 , ASP B:129 , ASP B:130 , GLY B:148 , GLY B:149 , ILE B:150 , PRO B:181 , VAL B:182 , ILE B:184 , HOH B:1001
BINDING SITE FOR RESIDUE G04 A 401
2
AC2
SOFTWARE
ASP A:60 , HOH A:1057 , HOH A:1058 , HOH A:1059 , HOH A:1060 , HOH A:1093
BINDING SITE FOR RESIDUE NA A 501
3
AC3
SOFTWARE
THR A:74 , ASN A:88 , ARG B:141
BINDING SITE FOR RESIDUE CL A 511
4
AC4
SOFTWARE
TRP B:106
BINDING SITE FOR RESIDUE CL B 512
5
AC5
SOFTWARE
GLN A:18 , MET A:36 , SER A:37 , HOH A:1027 , THR B:112 , GLU B:165 , ALA B:167 , GLY B:168
BINDING SITE FOR RESIDUE GOL B 521
6
AC6
SOFTWARE
LYS A:45 , MET A:46 , GLN B:161 , HOH B:1023 , HOH B:1031
BINDING SITE FOR RESIDUE GOL B 522
7
AC7
SOFTWARE
LYS B:155 , ARG B:157 , VAL B:177 , GLY B:178 , HOH B:1120
BINDING SITE FOR RESIDUE GOL B 523
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ASP_PROT_RETROV (A:20-89,B:120-189)
2: ASP_PROTEASE (A:22-32,B:122-132)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASP_PROT_RETROV
PS50175
Aspartyl protease, retroviral-type family profile.
POL_HV1B1
520-589
2
A:20-89
B:120-189
2
ASP_PROTEASE
PS00141
Eukaryotic and viral aspartyl proteases active site.
POL_HV1B1
522-533
2
A:22-32
B:122-132
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3qaaa_ (A:)
1b: SCOP_d3qaab_ (B:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
Retroviral protease (retropepsin)
(591)
Protein domain
:
Human immunodeficiency virus type 1 protease
(514)
Human immunodeficiency virus type 1 [TaxId: 11676]
(424)
1a
d3qaaa_
A:
1b
d3qaab_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (83 KB)
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