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3Q9C
Asym. Unit
Info
Asym.Unit (664 KB)
Biol.Unit 1 (118 KB)
Biol.Unit 2 (118 KB)
Biol.Unit 3 (119 KB)
Biol.Unit 4 (117 KB)
Biol.Unit 5 (119 KB)
Biol.Unit 6 (118 KB)
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Title
:
CRYSTAL STRUCTURE OF H159A APAH COMPLEXED WITH N8-ACETYLSPERMIDINE
Authors
:
P. M. Lombardi, D. W. Christianson
Date
:
07 Jan 11 (Deposition) - 02 Mar 11 (Release) - 30 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,I (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,K (1x)
Biol. Unit 4: D,J (1x)
Biol. Unit 5: E,H (1x)
Biol. Unit 6: G,L (1x)
Keywords
:
Hdac, Polyamine, Arginase Fold, Deacetylase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. M. Lombardi, H. D. Angell, D. A. Whittington, E. F. Flynn, K. R. Rajashankar, D. W. Christianson
Structure Of Prokaryotic Polyamine Deacetylase Reveals Evolutionary Functional Relationships With Eukaryotic Histone Deacetylases .
Biochemistry V. 50 1808 2011
[
close entry info
]
Hetero Components
(4, 48)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
1c: POTASSIUM ION (Kc)
1d: POTASSIUM ION (Kd)
1e: POTASSIUM ION (Ke)
1f: POTASSIUM ION (Kf)
1g: POTASSIUM ION (Kg)
1h: POTASSIUM ION (Kh)
1i: POTASSIUM ION (Ki)
1j: POTASSIUM ION (Kj)
1k: POTASSIUM ION (Kk)
1l: POTASSIUM ION (Kl)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
2e: SODIUM ION (NAe)
2f: SODIUM ION (NAf)
2g: SODIUM ION (NAg)
2h: SODIUM ION (NAh)
2i: SODIUM ION (NAi)
2j: SODIUM ION (NAj)
2k: SODIUM ION (NAk)
2l: SODIUM ION (NAl)
3a: N-{4-[(3-AMINOPROPYL)AMINO]BUTYL}A... (Q9Ca)
3b: N-{4-[(3-AMINOPROPYL)AMINO]BUTYL}A... (Q9Cb)
3c: N-{4-[(3-AMINOPROPYL)AMINO]BUTYL}A... (Q9Cc)
3d: N-{4-[(3-AMINOPROPYL)AMINO]BUTYL}A... (Q9Cd)
3e: N-{4-[(3-AMINOPROPYL)AMINO]BUTYL}A... (Q9Ce)
3f: N-{4-[(3-AMINOPROPYL)AMINO]BUTYL}A... (Q9Cf)
3g: N-{4-[(3-AMINOPROPYL)AMINO]BUTYL}A... (Q9Cg)
3h: N-{4-[(3-AMINOPROPYL)AMINO]BUTYL}A... (Q9Ch)
3i: N-{4-[(3-AMINOPROPYL)AMINO]BUTYL}A... (Q9Ci)
3j: N-{4-[(3-AMINOPROPYL)AMINO]BUTYL}A... (Q9Cj)
3k: N-{4-[(3-AMINOPROPYL)AMINO]BUTYL}A... (Q9Ck)
3l: N-{4-[(3-AMINOPROPYL)AMINO]BUTYL}A... (Q9Cl)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
4j: ZINC ION (ZNj)
4k: ZINC ION (ZNk)
4l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
K
12
Ligand/Ion
POTASSIUM ION
2
NA
12
Ligand/Ion
SODIUM ION
3
Q9C
12
Ligand/Ion
N-{4-[(3-AMINOPROPYL)AMINO]BUTYL}ACETAMIDE
4
ZN
12
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(48, 48)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:19 , GLU A:117 , PRO A:156 , HIS A:158 , GLY A:167 , TYR A:168 , CYS A:169 , ASP A:195 , HIS A:197 , PHE A:225 , GLY A:321 , TYR A:323 , ZN A:343 , HOH A:1000 , GLU I:106
BINDING SITE FOR RESIDUE Q9C A 401
02
AC2
SOFTWARE
ASP A:193 , ASP A:195 , HIS A:197 , SER A:216 , LEU A:217
BINDING SITE FOR RESIDUE K A 342
03
AC3
SOFTWARE
ASP A:195 , HIS A:197 , ASP A:284 , TYR A:323 , Q9C A:401
BINDING SITE FOR RESIDUE ZN A 343
04
AC4
SOFTWARE
PHE A:206 , ARG A:209 , VAL A:212 , THR A:243 , HOH A:353
BINDING SITE FOR RESIDUE NA A 344
05
AC5
SOFTWARE
TYR B:19 , GLU B:117 , PRO B:156 , HIS B:158 , GLY B:167 , TYR B:168 , CYS B:169 , ASP B:195 , HIS B:197 , PHE B:225 , TYR B:323 , ZN B:343 , HOH B:565 , HOH B:1449 , GLU F:106
BINDING SITE FOR RESIDUE Q9C B 402
06
AC6
SOFTWARE
ASP B:193 , ASP B:195 , HIS B:197 , SER B:216 , LEU B:217
BINDING SITE FOR RESIDUE K B 342
07
AC7
SOFTWARE
ASP B:195 , HIS B:197 , ASP B:284 , Q9C B:402
BINDING SITE FOR RESIDUE ZN B 343
08
AC8
SOFTWARE
PHE B:206 , ARG B:209 , VAL B:212 , THR B:243 , HOH B:352
BINDING SITE FOR RESIDUE NA B 344
09
AC9
SOFTWARE
TYR C:19 , GLU C:117 , HIS C:158 , GLY C:167 , TYR C:168 , ASP C:195 , HIS C:197 , PHE C:225 , TYR C:323 , ZN C:343 , HOH C:578 , HOH C:1084 , GLU K:106
BINDING SITE FOR RESIDUE Q9C C 403
10
BC1
SOFTWARE
ASP C:193 , ASP C:195 , HIS C:197 , SER C:216 , LEU C:217
BINDING SITE FOR RESIDUE K C 342
11
BC2
SOFTWARE
ASP C:195 , HIS C:197 , ASP C:284 , Q9C C:403
BINDING SITE FOR RESIDUE ZN C 343
12
BC3
SOFTWARE
PHE C:206 , ARG C:209 , VAL C:212 , THR C:243 , HOH C:351
BINDING SITE FOR RESIDUE NA C 344
13
BC4
SOFTWARE
GLU D:117 , PRO D:156 , HIS D:158 , GLY D:167 , TYR D:168 , ASP D:195 , HIS D:197 , PHE D:225 , GLY D:321 , TYR D:323 , ZN D:343 , HOH D:1003
BINDING SITE FOR RESIDUE Q9C D 404
14
BC5
SOFTWARE
ASP D:193 , ASP D:195 , HIS D:197 , SER D:216 , LEU D:217
BINDING SITE FOR RESIDUE K D 342
15
BC6
SOFTWARE
ASP D:195 , HIS D:197 , ASP D:284 , Q9C D:404
BINDING SITE FOR RESIDUE ZN D 343
16
BC7
SOFTWARE
PHE D:206 , ARG D:209 , VAL D:212 , THR D:243 , HOH D:351
BINDING SITE FOR RESIDUE NA D 344
17
BC8
SOFTWARE
TYR E:19 , GLU E:117 , PRO E:156 , HIS E:158 , GLY E:167 , TYR E:168 , CYS E:169 , ASP E:195 , HIS E:197 , PHE E:225 , GLY E:321 , TYR E:323 , ZN E:343 , HOH E:569 , TYR H:83 , GLU H:106
BINDING SITE FOR RESIDUE Q9C E 405
18
BC9
SOFTWARE
ASP E:193 , ASP E:195 , HIS E:197 , SER E:216 , LEU E:217
BINDING SITE FOR RESIDUE K E 342
19
CC1
SOFTWARE
ASP E:195 , HIS E:197 , ASP E:284 , Q9C E:405
BINDING SITE FOR RESIDUE ZN E 343
20
CC2
SOFTWARE
PHE E:206 , ARG E:209 , VAL E:212 , THR E:243 , HOH E:348
BINDING SITE FOR RESIDUE NA E 344
21
CC3
SOFTWARE
TYR B:83 , GLU F:117 , PRO F:156 , HIS F:158 , GLY F:167 , TYR F:168 , CYS F:169 , ASP F:195 , HIS F:197 , PHE F:225 , GLY F:321 , TYR F:323 , ZN F:343 , HOH F:573
BINDING SITE FOR RESIDUE Q9C F 406
22
CC4
SOFTWARE
ASP F:193 , ASP F:195 , HIS F:197 , SER F:216 , LEU F:217
BINDING SITE FOR RESIDUE K F 342
23
CC5
SOFTWARE
ASP F:195 , HIS F:197 , ASP F:284 , Q9C F:406
BINDING SITE FOR RESIDUE ZN F 343
24
CC6
SOFTWARE
PHE F:206 , ARG F:209 , VAL F:212 , THR F:243 , HOH F:1031
BINDING SITE FOR RESIDUE NA F 344
25
CC7
SOFTWARE
TYR G:19 , GLU G:117 , PRO G:156 , HIS G:158 , GLY G:167 , TYR G:168 , CYS G:169 , ASP G:195 , HIS G:197 , PHE G:225 , GLY G:321 , TYR G:323 , ZN G:343 , HOH G:1083 , HOH G:1759 , GLU L:106
BINDING SITE FOR RESIDUE Q9C G 407
26
CC8
SOFTWARE
ASP G:193 , ASP G:195 , HIS G:197 , SER G:216 , LEU G:217
BINDING SITE FOR RESIDUE K G 342
27
CC9
SOFTWARE
ASP G:195 , HIS G:197 , ASP G:284 , Q9C G:407
BINDING SITE FOR RESIDUE ZN G 343
28
DC1
SOFTWARE
PHE G:206 , ARG G:209 , VAL G:212 , THR G:243 , HOH G:347
BINDING SITE FOR RESIDUE NA G 344
29
DC2
SOFTWARE
GLU E:106 , TYR H:19 , GLU H:117 , PRO H:156 , HIS H:158 , GLY H:167 , TYR H:168 , CYS H:169 , ASP H:195 , HIS H:197 , PHE H:225 , GLY H:321 , TYR H:323 , ZN H:343 , HOH H:556 , HOH H:990
BINDING SITE FOR RESIDUE Q9C H 408
30
DC3
SOFTWARE
ASP H:193 , ASP H:195 , HIS H:197 , SER H:216 , LEU H:217
BINDING SITE FOR RESIDUE K H 342
31
DC4
SOFTWARE
ASP H:195 , HIS H:197 , ASP H:284 , TYR H:323 , Q9C H:408
BINDING SITE FOR RESIDUE ZN H 343
32
DC5
SOFTWARE
PHE H:206 , ARG H:209 , VAL H:212 , THR H:243 , HOH H:381
BINDING SITE FOR RESIDUE NA H 344
33
DC6
SOFTWARE
GLU A:106 , TYR I:19 , GLU I:117 , PRO I:156 , HIS I:158 , GLY I:167 , TYR I:168 , CYS I:169 , ASP I:195 , HIS I:197 , PHE I:225 , ASP I:284 , GLY I:321 , TYR I:323 , ZN I:343 , HOH I:558 , HOH I:559
BINDING SITE FOR RESIDUE Q9C I 409
34
DC7
SOFTWARE
ASP I:193 , ASP I:195 , HIS I:197 , SER I:216 , LEU I:217
BINDING SITE FOR RESIDUE K I 342
35
DC8
SOFTWARE
ASP I:195 , HIS I:197 , ASP I:284 , Q9C I:409
BINDING SITE FOR RESIDUE ZN I 343
36
DC9
SOFTWARE
PHE I:206 , ARG I:209 , VAL I:212 , THR I:243 , HOH I:402
BINDING SITE FOR RESIDUE NA I 344
37
EC1
SOFTWARE
GLU D:106 , TYR J:19 , GLU J:117 , PRO J:156 , HIS J:158 , GLY J:167 , TYR J:168 , CYS J:169 , ASP J:195 , HIS J:197 , PHE J:225 , GLY J:321 , TYR J:323 , ZN J:343 , HOH J:555 , HOH J:575
BINDING SITE FOR RESIDUE Q9C J 410
38
EC2
SOFTWARE
ASP J:193 , ASP J:195 , HIS J:197 , SER J:216 , LEU J:217
BINDING SITE FOR RESIDUE K J 342
39
EC3
SOFTWARE
ASP J:195 , HIS J:197 , ASP J:284 , Q9C J:410
BINDING SITE FOR RESIDUE ZN J 343
40
EC4
SOFTWARE
PHE J:206 , ARG J:209 , VAL J:212 , THR J:243 , HOH J:363
BINDING SITE FOR RESIDUE NA J 344
41
EC5
SOFTWARE
GLU C:106 , TYR K:19 , GLU K:117 , PRO K:156 , HIS K:158 , GLY K:167 , TYR K:168 , ASP K:195 , HIS K:197 , PHE K:225 , ASP K:284 , GLY K:321 , TYR K:323 , ZN K:343 , HOH K:561 , HOH K:579
BINDING SITE FOR RESIDUE Q9C K 411
42
EC6
SOFTWARE
ASP K:193 , ASP K:195 , HIS K:197 , SER K:216 , LEU K:217
BINDING SITE FOR RESIDUE K K 342
43
EC7
SOFTWARE
ASP K:195 , HIS K:197 , ASP K:284 , Q9C K:411
BINDING SITE FOR RESIDUE ZN K 343
44
EC8
SOFTWARE
PHE K:206 , ARG K:209 , VAL K:212 , THR K:243 , HOH K:355
BINDING SITE FOR RESIDUE NA K 344
45
EC9
SOFTWARE
TYR G:83 , TYR L:19 , GLU L:117 , PRO L:156 , HIS L:158 , GLY L:167 , TYR L:168 , CYS L:169 , HIS L:197 , PHE L:225 , TYR L:323 , ZN L:343 , HOH L:1002
BINDING SITE FOR RESIDUE Q9C L 412
46
FC1
SOFTWARE
ASP L:193 , ASP L:195 , HIS L:197 , SER L:216 , LEU L:217
BINDING SITE FOR RESIDUE K L 342
47
FC2
SOFTWARE
ASP L:195 , HIS L:197 , ASP L:284 , Q9C L:412
BINDING SITE FOR RESIDUE ZN L 343
48
FC3
SOFTWARE
PHE L:206 , ARG L:209 , VAL L:212 , THR L:243 , HOH L:1032
BINDING SITE FOR RESIDUE NA L 344
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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CATH Domains
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Pfam Domains
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Asym.Unit (664 KB)
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