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3Q9B
Biol. Unit 6
Info
Asym.Unit (698 KB)
Biol.Unit 1 (125 KB)
Biol.Unit 2 (126 KB)
Biol.Unit 3 (126 KB)
Biol.Unit 4 (125 KB)
Biol.Unit 5 (126 KB)
Biol.Unit 6 (125 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF APAH COMPLEXED WITH M344
Authors
:
P. M. Lombardi, D. W. Christianson
Date
:
07 Jan 11 (Deposition) - 02 Mar 11 (Release) - 30 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,I (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,K (1x)
Biol. Unit 4: D,J (1x)
Biol. Unit 5: E,H (1x)
Biol. Unit 6: G,L (1x)
Keywords
:
Hdac, Polyamines, Arginase Fold, Deacetylase, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. M. Lombardi, H. D. Angell, D. A. Whittington, E. F. Flynn, K. R. Rajashankar, D. W. Christianson
Structure Of Prokaryotic Polyamine Deacetylase Reveals Evolutionary Functional Relationships With Eukaryotic Histone Deacetylases .
Biochemistry V. 50 1808 2011
[
close entry info
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Na)
1b: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nb)
1c: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nc)
1d: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nd)
1e: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Ne)
1f: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nf)
1g: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Ng)
1h: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nh)
1i: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Ni)
1j: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nj)
1k: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nk)
1l: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nl)
2a: DIMETHYL SULFOXIDE (DMSa)
2aa: DIMETHYL SULFOXIDE (DMSaa)
2ab: DIMETHYL SULFOXIDE (DMSab)
2ac: DIMETHYL SULFOXIDE (DMSac)
2ad: DIMETHYL SULFOXIDE (DMSad)
2ae: DIMETHYL SULFOXIDE (DMSae)
2af: DIMETHYL SULFOXIDE (DMSaf)
2ag: DIMETHYL SULFOXIDE (DMSag)
2ah: DIMETHYL SULFOXIDE (DMSah)
2ai: DIMETHYL SULFOXIDE (DMSai)
2aj: DIMETHYL SULFOXIDE (DMSaj)
2ak: DIMETHYL SULFOXIDE (DMSak)
2al: DIMETHYL SULFOXIDE (DMSal)
2am: DIMETHYL SULFOXIDE (DMSam)
2an: DIMETHYL SULFOXIDE (DMSan)
2ao: DIMETHYL SULFOXIDE (DMSao)
2ap: DIMETHYL SULFOXIDE (DMSap)
2aq: DIMETHYL SULFOXIDE (DMSaq)
2ar: DIMETHYL SULFOXIDE (DMSar)
2as: DIMETHYL SULFOXIDE (DMSas)
2at: DIMETHYL SULFOXIDE (DMSat)
2au: DIMETHYL SULFOXIDE (DMSau)
2av: DIMETHYL SULFOXIDE (DMSav)
2aw: DIMETHYL SULFOXIDE (DMSaw)
2ax: DIMETHYL SULFOXIDE (DMSax)
2ay: DIMETHYL SULFOXIDE (DMSay)
2az: DIMETHYL SULFOXIDE (DMSaz)
2b: DIMETHYL SULFOXIDE (DMSb)
2ba: DIMETHYL SULFOXIDE (DMSba)
2bb: DIMETHYL SULFOXIDE (DMSbb)
2bc: DIMETHYL SULFOXIDE (DMSbc)
2bd: DIMETHYL SULFOXIDE (DMSbd)
2be: DIMETHYL SULFOXIDE (DMSbe)
2bf: DIMETHYL SULFOXIDE (DMSbf)
2bg: DIMETHYL SULFOXIDE (DMSbg)
2bh: DIMETHYL SULFOXIDE (DMSbh)
2bi: DIMETHYL SULFOXIDE (DMSbi)
2bj: DIMETHYL SULFOXIDE (DMSbj)
2bk: DIMETHYL SULFOXIDE (DMSbk)
2bl: DIMETHYL SULFOXIDE (DMSbl)
2bm: DIMETHYL SULFOXIDE (DMSbm)
2bn: DIMETHYL SULFOXIDE (DMSbn)
2bo: DIMETHYL SULFOXIDE (DMSbo)
2bp: DIMETHYL SULFOXIDE (DMSbp)
2bq: DIMETHYL SULFOXIDE (DMSbq)
2br: DIMETHYL SULFOXIDE (DMSbr)
2bs: DIMETHYL SULFOXIDE (DMSbs)
2bt: DIMETHYL SULFOXIDE (DMSbt)
2bu: DIMETHYL SULFOXIDE (DMSbu)
2bv: DIMETHYL SULFOXIDE (DMSbv)
2bw: DIMETHYL SULFOXIDE (DMSbw)
2bx: DIMETHYL SULFOXIDE (DMSbx)
2by: DIMETHYL SULFOXIDE (DMSby)
2bz: DIMETHYL SULFOXIDE (DMSbz)
2c: DIMETHYL SULFOXIDE (DMSc)
2ca: DIMETHYL SULFOXIDE (DMSca)
2cb: DIMETHYL SULFOXIDE (DMScb)
2cc: DIMETHYL SULFOXIDE (DMScc)
2cd: DIMETHYL SULFOXIDE (DMScd)
2ce: DIMETHYL SULFOXIDE (DMSce)
2cf: DIMETHYL SULFOXIDE (DMScf)
2cg: DIMETHYL SULFOXIDE (DMScg)
2ch: DIMETHYL SULFOXIDE (DMSch)
2ci: DIMETHYL SULFOXIDE (DMSci)
2cj: DIMETHYL SULFOXIDE (DMScj)
2ck: DIMETHYL SULFOXIDE (DMSck)
2cl: DIMETHYL SULFOXIDE (DMScl)
2cm: DIMETHYL SULFOXIDE (DMScm)
2cn: DIMETHYL SULFOXIDE (DMScn)
2co: DIMETHYL SULFOXIDE (DMSco)
2cp: DIMETHYL SULFOXIDE (DMScp)
2cq: DIMETHYL SULFOXIDE (DMScq)
2cr: DIMETHYL SULFOXIDE (DMScr)
2cs: DIMETHYL SULFOXIDE (DMScs)
2ct: DIMETHYL SULFOXIDE (DMSct)
2cu: DIMETHYL SULFOXIDE (DMScu)
2cv: DIMETHYL SULFOXIDE (DMScv)
2cw: DIMETHYL SULFOXIDE (DMScw)
2cx: DIMETHYL SULFOXIDE (DMScx)
2cy: DIMETHYL SULFOXIDE (DMScy)
2cz: DIMETHYL SULFOXIDE (DMScz)
2d: DIMETHYL SULFOXIDE (DMSd)
2da: DIMETHYL SULFOXIDE (DMSda)
2db: DIMETHYL SULFOXIDE (DMSdb)
2dc: DIMETHYL SULFOXIDE (DMSdc)
2dd: DIMETHYL SULFOXIDE (DMSdd)
2e: DIMETHYL SULFOXIDE (DMSe)
2f: DIMETHYL SULFOXIDE (DMSf)
2g: DIMETHYL SULFOXIDE (DMSg)
2h: DIMETHYL SULFOXIDE (DMSh)
2i: DIMETHYL SULFOXIDE (DMSi)
2j: DIMETHYL SULFOXIDE (DMSj)
2k: DIMETHYL SULFOXIDE (DMSk)
2l: DIMETHYL SULFOXIDE (DMSl)
2m: DIMETHYL SULFOXIDE (DMSm)
2n: DIMETHYL SULFOXIDE (DMSn)
2o: DIMETHYL SULFOXIDE (DMSo)
2p: DIMETHYL SULFOXIDE (DMSp)
2q: DIMETHYL SULFOXIDE (DMSq)
2r: DIMETHYL SULFOXIDE (DMSr)
2s: DIMETHYL SULFOXIDE (DMSs)
2t: DIMETHYL SULFOXIDE (DMSt)
2u: DIMETHYL SULFOXIDE (DMSu)
2v: DIMETHYL SULFOXIDE (DMSv)
2w: DIMETHYL SULFOXIDE (DMSw)
2x: DIMETHYL SULFOXIDE (DMSx)
2y: DIMETHYL SULFOXIDE (DMSy)
2z: DIMETHYL SULFOXIDE (DMSz)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
3e: POTASSIUM ION (Ke)
3f: POTASSIUM ION (Kf)
3g: POTASSIUM ION (Kg)
3h: POTASSIUM ION (Kh)
3i: POTASSIUM ION (Ki)
3j: POTASSIUM ION (Kj)
3k: POTASSIUM ION (Kk)
3l: POTASSIUM ION (Kl)
3m: POTASSIUM ION (Km)
3n: POTASSIUM ION (Kn)
3o: POTASSIUM ION (Ko)
3p: POTASSIUM ION (Kp)
3q: POTASSIUM ION (Kq)
3r: POTASSIUM ION (Kr)
3s: POTASSIUM ION (Ks)
3t: POTASSIUM ION (Kt)
3u: POTASSIUM ION (Ku)
3v: POTASSIUM ION (Kv)
3w: POTASSIUM ION (Kw)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
4e: SODIUM ION (NAe)
4f: SODIUM ION (NAf)
4g: SODIUM ION (NAg)
4h: SODIUM ION (NAh)
4i: SODIUM ION (NAi)
4j: SODIUM ION (NAj)
4k: SODIUM ION (NAk)
4l: SODIUM ION (NAl)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
B3N
2
Ligand/Ion
4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMINO)-7-OXOHEPTYL]BENZAMIDE
2
DMS
18
Ligand/Ion
DIMETHYL SULFOXIDE
3
K
-1
Ligand/Ion
POTASSIUM ION
4
NA
-1
Ligand/Ion
SODIUM ION
5
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: CC1 (SOFTWARE)
02: CC3 (SOFTWARE)
03: JC7 (SOFTWARE)
04: JC8 (SOFTWARE)
05: JC9 (SOFTWARE)
06: KC1 (SOFTWARE)
07: KC2 (SOFTWARE)
08: KC3 (SOFTWARE)
09: KC4 (SOFTWARE)
10: KC5 (SOFTWARE)
11: KC6 (SOFTWARE)
12: KC7 (SOFTWARE)
13: KC8 (SOFTWARE)
14: KC9 (SOFTWARE)
15: LC1 (SOFTWARE)
16: LC2 (SOFTWARE)
17: LC3 (SOFTWARE)
18: QC1 (SOFTWARE)
19: QC3 (SOFTWARE)
20: RC2 (SOFTWARE)
21: RC3 (SOFTWARE)
22: RC4 (SOFTWARE)
23: RC5 (SOFTWARE)
24: RC6 (SOFTWARE)
25: RC7 (SOFTWARE)
26: RC8 (SOFTWARE)
27: RC9 (SOFTWARE)
28: SC1 (SOFTWARE)
29: SC2 (SOFTWARE)
30: SC3 (SOFTWARE)
31: SC4 (SOFTWARE)
32: SC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC1
SOFTWARE
ILE B:101 , PRO B:102 , HOH B:1028 , GLY L:210 , HOH L:394
BINDING SITE FOR RESIDUE DMS B 413
02
CC3
SOFTWARE
GLN B:179 , ASP B:183 , ARG B:209 , GLY L:66 , ASN L:69
BINDING SITE FOR RESIDUE DMS B 417
03
JC7
SOFTWARE
TYR G:19 , GLY G:20 , HOH G:351 , TRP L:78 , TYR L:83 , HOH L:1622
BINDING SITE FOR RESIDUE DMS G 403
04
JC8
SOFTWARE
LEU G:60 , LYS G:61 , ASP G:64
BINDING SITE FOR RESIDUE DMS G 405
05
JC9
SOFTWARE
ASN G:114 , ASN G:200 , LEU G:229 , HOH G:1126 , ARG L:95 , ARG L:96 , THR L:97
BINDING SITE FOR RESIDUE DMS G 411
06
KC1
SOFTWARE
ILE G:101 , PRO G:102 , HOH G:369 , HOH G:905 , GLY K:210
BINDING SITE FOR RESIDUE DMS G 413
07
KC2
SOFTWARE
ILE G:142 , GLU G:275 , ALA G:276
BINDING SITE FOR RESIDUE DMS G 415
08
KC3
SOFTWARE
GLN G:179 , ARG G:209 , HOH G:2267 , ALA K:65 , GLY K:66 , ASN K:69
BINDING SITE FOR RESIDUE DMS G 417
09
KC4
SOFTWARE
ALA G:232 , ARG G:268
BINDING SITE FOR RESIDUE DMS G 419
10
KC5
SOFTWARE
ALA G:52 , ARG G:53 , HIS G:54 , ALA G:133 , HOH G:1949
BINDING SITE FOR RESIDUE DMS G 423
11
KC6
SOFTWARE
TYR G:83 , GLU G:106 , HOH G:732 , TYR L:19 , GLY L:20
BINDING SITE FOR RESIDUE DMS G 342
12
KC7
SOFTWARE
ARG G:95 , ARG G:96 , THR G:97 , HOH G:1438 , MET L:164 , ASN L:200 , LEU L:229
BINDING SITE FOR RESIDUE DMS G 343
13
KC8
SOFTWARE
TYR G:19 , PHE G:27 , GLU G:117 , HIS G:158 , HIS G:159 , TYR G:168 , ASP G:195 , HIS G:197 , PHE G:225 , ASP G:284 , PRO G:290 , ILE G:291 , ZN G:346 , HOH G:753
BINDING SITE FOR RESIDUE B3N G 401
14
KC9
SOFTWARE
ASP G:193 , ASP G:195 , HIS G:197 , SER G:216 , LEU G:217
BINDING SITE FOR RESIDUE K G 344
15
LC1
SOFTWARE
PHE G:206 , ARG G:209 , VAL G:212 , THR G:243 , HOH G:555
BINDING SITE FOR RESIDUE NA G 345
16
LC2
SOFTWARE
ASP G:195 , HIS G:197 , ASP G:284 , B3N G:401
BINDING SITE FOR RESIDUE ZN G 346
17
LC3
SOFTWARE
PHE G:286 , GLU G:287 , ASP G:289 , SER G:292 , PHE G:294 , HOH G:1873
BINDING SITE FOR RESIDUE K G 347
18
QC1
SOFTWARE
HOH G:963 , ILE K:101 , PRO K:102
BINDING SITE FOR RESIDUE DMS K 413
19
QC3
SOFTWARE
ALA G:65 , GLN K:179 , ARG K:209
BINDING SITE FOR RESIDUE DMS K 417
20
RC2
SOFTWARE
TYR G:207 , GLU G:234 , THR L:97 , HOH L:1537
BINDING SITE FOR RESIDUE DMS L 421
21
RC3
SOFTWARE
LEU L:60 , LYS L:61 , HIS L:63 , HOH L:1421 , HOH L:2261
BINDING SITE FOR RESIDUE DMS L 405
22
RC4
SOFTWARE
GLY B:210 , HOH B:374 , ILE L:101 , PRO L:102 , HOH L:1116
BINDING SITE FOR RESIDUE DMS L 413
23
RC5
SOFTWARE
ILE L:142 , GLU L:275 , ALA L:276
BINDING SITE FOR RESIDUE DMS L 415
24
RC6
SOFTWARE
GLN L:179 , ASP L:183 , ARG L:209
BINDING SITE FOR RESIDUE DMS L 417
25
RC7
SOFTWARE
TYR L:247 , ARG L:268
BINDING SITE FOR RESIDUE DMS L 419
26
RC8
SOFTWARE
THR G:97 , TYR L:207
BINDING SITE FOR RESIDUE DMS L 342
27
RC9
SOFTWARE
ARG L:53 , HIS L:54
BINDING SITE FOR RESIDUE DMS L 423
28
SC1
SOFTWARE
TYR L:19 , PHE L:27 , GLU L:117 , HIS L:158 , HIS L:159 , TYR L:168 , ASP L:195 , HIS L:197 , PHE L:225 , ASP L:284 , PRO L:290 , ILE L:291 , ZN L:345 , HOH L:547 , HOH L:548
BINDING SITE FOR RESIDUE B3N L 407
29
SC2
SOFTWARE
ASP L:193 , ASP L:195 , HIS L:197 , SER L:216 , LEU L:217
BINDING SITE FOR RESIDUE K L 343
30
SC3
SOFTWARE
PHE L:206 , ARG L:209 , VAL L:212 , THR L:243 , HOH L:581
BINDING SITE FOR RESIDUE NA L 344
31
SC4
SOFTWARE
ASP L:195 , HIS L:197 , ASP L:284 , B3N L:407
BINDING SITE FOR RESIDUE ZN L 345
32
SC5
SOFTWARE
PHE L:286 , GLU L:287 , ASP L:289 , SER L:292 , PHE L:294 , HOH L:1735
BINDING SITE FOR RESIDUE K L 346
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SAPs(SNPs)/Variants
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(mutated residues are only available for the asymmetric unit)
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SCOP Domains
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CATH Domains
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