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3Q9B
Biol. Unit 5
Info
Asym.Unit (698 KB)
Biol.Unit 1 (125 KB)
Biol.Unit 2 (126 KB)
Biol.Unit 3 (126 KB)
Biol.Unit 4 (125 KB)
Biol.Unit 5 (126 KB)
Biol.Unit 6 (125 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF APAH COMPLEXED WITH M344
Authors
:
P. M. Lombardi, D. W. Christianson
Date
:
07 Jan 11 (Deposition) - 02 Mar 11 (Release) - 30 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,I (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,K (1x)
Biol. Unit 4: D,J (1x)
Biol. Unit 5: E,H (1x)
Biol. Unit 6: G,L (1x)
Keywords
:
Hdac, Polyamines, Arginase Fold, Deacetylase, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. M. Lombardi, H. D. Angell, D. A. Whittington, E. F. Flynn, K. R. Rajashankar, D. W. Christianson
Structure Of Prokaryotic Polyamine Deacetylase Reveals Evolutionary Functional Relationships With Eukaryotic Histone Deacetylases .
Biochemistry V. 50 1808 2011
[
close entry info
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Na)
1b: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nb)
1c: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nc)
1d: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nd)
1e: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Ne)
1f: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nf)
1g: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Ng)
1h: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nh)
1i: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Ni)
1j: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nj)
1k: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nk)
1l: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nl)
2a: DIMETHYL SULFOXIDE (DMSa)
2aa: DIMETHYL SULFOXIDE (DMSaa)
2ab: DIMETHYL SULFOXIDE (DMSab)
2ac: DIMETHYL SULFOXIDE (DMSac)
2ad: DIMETHYL SULFOXIDE (DMSad)
2ae: DIMETHYL SULFOXIDE (DMSae)
2af: DIMETHYL SULFOXIDE (DMSaf)
2ag: DIMETHYL SULFOXIDE (DMSag)
2ah: DIMETHYL SULFOXIDE (DMSah)
2ai: DIMETHYL SULFOXIDE (DMSai)
2aj: DIMETHYL SULFOXIDE (DMSaj)
2ak: DIMETHYL SULFOXIDE (DMSak)
2al: DIMETHYL SULFOXIDE (DMSal)
2am: DIMETHYL SULFOXIDE (DMSam)
2an: DIMETHYL SULFOXIDE (DMSan)
2ao: DIMETHYL SULFOXIDE (DMSao)
2ap: DIMETHYL SULFOXIDE (DMSap)
2aq: DIMETHYL SULFOXIDE (DMSaq)
2ar: DIMETHYL SULFOXIDE (DMSar)
2as: DIMETHYL SULFOXIDE (DMSas)
2at: DIMETHYL SULFOXIDE (DMSat)
2au: DIMETHYL SULFOXIDE (DMSau)
2av: DIMETHYL SULFOXIDE (DMSav)
2aw: DIMETHYL SULFOXIDE (DMSaw)
2ax: DIMETHYL SULFOXIDE (DMSax)
2ay: DIMETHYL SULFOXIDE (DMSay)
2az: DIMETHYL SULFOXIDE (DMSaz)
2b: DIMETHYL SULFOXIDE (DMSb)
2ba: DIMETHYL SULFOXIDE (DMSba)
2bb: DIMETHYL SULFOXIDE (DMSbb)
2bc: DIMETHYL SULFOXIDE (DMSbc)
2bd: DIMETHYL SULFOXIDE (DMSbd)
2be: DIMETHYL SULFOXIDE (DMSbe)
2bf: DIMETHYL SULFOXIDE (DMSbf)
2bg: DIMETHYL SULFOXIDE (DMSbg)
2bh: DIMETHYL SULFOXIDE (DMSbh)
2bi: DIMETHYL SULFOXIDE (DMSbi)
2bj: DIMETHYL SULFOXIDE (DMSbj)
2bk: DIMETHYL SULFOXIDE (DMSbk)
2bl: DIMETHYL SULFOXIDE (DMSbl)
2bm: DIMETHYL SULFOXIDE (DMSbm)
2bn: DIMETHYL SULFOXIDE (DMSbn)
2bo: DIMETHYL SULFOXIDE (DMSbo)
2bp: DIMETHYL SULFOXIDE (DMSbp)
2bq: DIMETHYL SULFOXIDE (DMSbq)
2br: DIMETHYL SULFOXIDE (DMSbr)
2bs: DIMETHYL SULFOXIDE (DMSbs)
2bt: DIMETHYL SULFOXIDE (DMSbt)
2bu: DIMETHYL SULFOXIDE (DMSbu)
2bv: DIMETHYL SULFOXIDE (DMSbv)
2bw: DIMETHYL SULFOXIDE (DMSbw)
2bx: DIMETHYL SULFOXIDE (DMSbx)
2by: DIMETHYL SULFOXIDE (DMSby)
2bz: DIMETHYL SULFOXIDE (DMSbz)
2c: DIMETHYL SULFOXIDE (DMSc)
2ca: DIMETHYL SULFOXIDE (DMSca)
2cb: DIMETHYL SULFOXIDE (DMScb)
2cc: DIMETHYL SULFOXIDE (DMScc)
2cd: DIMETHYL SULFOXIDE (DMScd)
2ce: DIMETHYL SULFOXIDE (DMSce)
2cf: DIMETHYL SULFOXIDE (DMScf)
2cg: DIMETHYL SULFOXIDE (DMScg)
2ch: DIMETHYL SULFOXIDE (DMSch)
2ci: DIMETHYL SULFOXIDE (DMSci)
2cj: DIMETHYL SULFOXIDE (DMScj)
2ck: DIMETHYL SULFOXIDE (DMSck)
2cl: DIMETHYL SULFOXIDE (DMScl)
2cm: DIMETHYL SULFOXIDE (DMScm)
2cn: DIMETHYL SULFOXIDE (DMScn)
2co: DIMETHYL SULFOXIDE (DMSco)
2cp: DIMETHYL SULFOXIDE (DMScp)
2cq: DIMETHYL SULFOXIDE (DMScq)
2cr: DIMETHYL SULFOXIDE (DMScr)
2cs: DIMETHYL SULFOXIDE (DMScs)
2ct: DIMETHYL SULFOXIDE (DMSct)
2cu: DIMETHYL SULFOXIDE (DMScu)
2cv: DIMETHYL SULFOXIDE (DMScv)
2cw: DIMETHYL SULFOXIDE (DMScw)
2cx: DIMETHYL SULFOXIDE (DMScx)
2cy: DIMETHYL SULFOXIDE (DMScy)
2cz: DIMETHYL SULFOXIDE (DMScz)
2d: DIMETHYL SULFOXIDE (DMSd)
2da: DIMETHYL SULFOXIDE (DMSda)
2db: DIMETHYL SULFOXIDE (DMSdb)
2dc: DIMETHYL SULFOXIDE (DMSdc)
2dd: DIMETHYL SULFOXIDE (DMSdd)
2e: DIMETHYL SULFOXIDE (DMSe)
2f: DIMETHYL SULFOXIDE (DMSf)
2g: DIMETHYL SULFOXIDE (DMSg)
2h: DIMETHYL SULFOXIDE (DMSh)
2i: DIMETHYL SULFOXIDE (DMSi)
2j: DIMETHYL SULFOXIDE (DMSj)
2k: DIMETHYL SULFOXIDE (DMSk)
2l: DIMETHYL SULFOXIDE (DMSl)
2m: DIMETHYL SULFOXIDE (DMSm)
2n: DIMETHYL SULFOXIDE (DMSn)
2o: DIMETHYL SULFOXIDE (DMSo)
2p: DIMETHYL SULFOXIDE (DMSp)
2q: DIMETHYL SULFOXIDE (DMSq)
2r: DIMETHYL SULFOXIDE (DMSr)
2s: DIMETHYL SULFOXIDE (DMSs)
2t: DIMETHYL SULFOXIDE (DMSt)
2u: DIMETHYL SULFOXIDE (DMSu)
2v: DIMETHYL SULFOXIDE (DMSv)
2w: DIMETHYL SULFOXIDE (DMSw)
2x: DIMETHYL SULFOXIDE (DMSx)
2y: DIMETHYL SULFOXIDE (DMSy)
2z: DIMETHYL SULFOXIDE (DMSz)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
3e: POTASSIUM ION (Ke)
3f: POTASSIUM ION (Kf)
3g: POTASSIUM ION (Kg)
3h: POTASSIUM ION (Kh)
3i: POTASSIUM ION (Ki)
3j: POTASSIUM ION (Kj)
3k: POTASSIUM ION (Kk)
3l: POTASSIUM ION (Kl)
3m: POTASSIUM ION (Km)
3n: POTASSIUM ION (Kn)
3o: POTASSIUM ION (Ko)
3p: POTASSIUM ION (Kp)
3q: POTASSIUM ION (Kq)
3r: POTASSIUM ION (Kr)
3s: POTASSIUM ION (Ks)
3t: POTASSIUM ION (Kt)
3u: POTASSIUM ION (Ku)
3v: POTASSIUM ION (Kv)
3w: POTASSIUM ION (Kw)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
4e: SODIUM ION (NAe)
4f: SODIUM ION (NAf)
4g: SODIUM ION (NAg)
4h: SODIUM ION (NAh)
4i: SODIUM ION (NAi)
4j: SODIUM ION (NAj)
4k: SODIUM ION (NAk)
4l: SODIUM ION (NAl)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
B3N
2
Ligand/Ion
4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMINO)-7-OXOHEPTYL]BENZAMIDE
2
DMS
18
Ligand/Ion
DIMETHYL SULFOXIDE
3
K
-1
Ligand/Ion
POTASSIUM ION
4
NA
-1
Ligand/Ion
SODIUM ION
5
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: EC7 (SOFTWARE)
02: EC9 (SOFTWARE)
03: GC3 (SOFTWARE)
04: GC4 (SOFTWARE)
05: GC5 (SOFTWARE)
06: GC6 (SOFTWARE)
07: GC7 (SOFTWARE)
08: GC8 (SOFTWARE)
09: GC9 (SOFTWARE)
10: HC1 (SOFTWARE)
11: HC2 (SOFTWARE)
12: HC3 (SOFTWARE)
13: HC4 (SOFTWARE)
14: HC5 (SOFTWARE)
15: HC6 (SOFTWARE)
16: HC7 (SOFTWARE)
17: HC8 (SOFTWARE)
18: LC4 (SOFTWARE)
19: LC5 (SOFTWARE)
20: LC6 (SOFTWARE)
21: LC7 (SOFTWARE)
22: LC8 (SOFTWARE)
23: LC9 (SOFTWARE)
24: MC1 (SOFTWARE)
25: MC2 (SOFTWARE)
26: MC3 (SOFTWARE)
27: MC4 (SOFTWARE)
28: MC5 (SOFTWARE)
29: MC6 (SOFTWARE)
30: MC7 (SOFTWARE)
31: NC2 (SOFTWARE)
32: NC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
EC7
SOFTWARE
ILE D:101 , PRO D:102 , HOH D:1639 , GLY H:210
BINDING SITE FOR RESIDUE DMS D 413
02
EC9
SOFTWARE
GLN D:179 , ARG D:209 , ALA H:65 , ASN H:69
BINDING SITE FOR RESIDUE DMS D 417
03
GC3
SOFTWARE
TYR E:19 , GLY E:20 , TRP H:78 , TYR H:83 , GLU H:106
BINDING SITE FOR RESIDUE DMS E 403
04
GC4
SOFTWARE
LEU E:60 , LYS E:61 , VAL E:62 , HIS E:63
BINDING SITE FOR RESIDUE DMS E 405
05
GC5
SOFTWARE
ILE E:101 , PRO E:102 , HOH E:965
BINDING SITE FOR RESIDUE DMS E 413
06
GC6
SOFTWARE
ILE E:142 , GLU E:275 , ALA E:276 , HOH E:705
BINDING SITE FOR RESIDUE DMS E 415
07
GC7
SOFTWARE
GLN E:179 , ASP E:183 , GLY I:66 , ASN I:69
BINDING SITE FOR RESIDUE DMS E 417
08
GC8
SOFTWARE
ASN E:246 , TYR E:247 , ARG E:268
BINDING SITE FOR RESIDUE DMS E 419
09
GC9
SOFTWARE
ALA E:52 , ARG E:53 , HIS E:54 , ALA E:133
BINDING SITE FOR RESIDUE DMS E 423
10
HC1
SOFTWARE
TRP E:78 , TYR E:83 , GLU E:106 , TYR H:19 , GLY H:20 , HOH H:910
BINDING SITE FOR RESIDUE DMS E 342
11
HC2
SOFTWARE
ARG E:95 , ARG E:96 , THR E:97 , HOH E:1331 , ASN H:200 , ASP H:204 , LEU H:229
BINDING SITE FOR RESIDUE DMS E 411
12
HC3
SOFTWARE
ARG E:96 , THR E:97 , SER E:98 , TYR H:207
BINDING SITE FOR RESIDUE DMS E 421
13
HC4
SOFTWARE
TYR E:19 , PHE E:27 , HIS E:158 , HIS E:159 , TYR E:168 , ASP E:195 , HIS E:197 , PHE E:225 , ASP E:284 , PRO E:290 , ILE E:291 , ZN E:345
BINDING SITE FOR RESIDUE B3N E 401
14
HC5
SOFTWARE
ASP E:193 , ASP E:195 , HIS E:197 , SER E:216 , LEU E:217
BINDING SITE FOR RESIDUE K E 343
15
HC6
SOFTWARE
PHE E:206 , ARG E:209 , VAL E:212 , THR E:243 , HOH E:556
BINDING SITE FOR RESIDUE NA E 344
16
HC7
SOFTWARE
ASP E:195 , HIS E:197 , ASP E:284 , B3N E:401
BINDING SITE FOR RESIDUE ZN E 345
17
HC8
SOFTWARE
PHE E:286 , GLU E:287 , ASP E:289 , SER E:292 , PHE E:294 , HOH E:1766
BINDING SITE FOR RESIDUE K E 346
18
LC4
SOFTWARE
ASN E:200 , ASP E:204 , LEU E:229 , ARG H:95 , ARG H:96 , THR H:97 , HOH H:1591
BINDING SITE FOR RESIDUE DMS H 411
19
LC5
SOFTWARE
TYR E:207 , ARG H:96 , THR H:97
BINDING SITE FOR RESIDUE DMS H 421
20
LC6
SOFTWARE
LEU H:60 , LYS H:61 , HIS H:63 , HOH H:788
BINDING SITE FOR RESIDUE DMS H 405
21
LC7
SOFTWARE
GLY D:210 , HOH D:1648 , ILE H:101 , PRO H:102 , HOH H:346
BINDING SITE FOR RESIDUE DMS H 413
22
LC8
SOFTWARE
ILE H:142 , GLU H:275 , ALA H:276
BINDING SITE FOR RESIDUE DMS H 415
23
LC9
SOFTWARE
ASN D:69 , GLN H:179 , ARG H:209
BINDING SITE FOR RESIDUE DMS H 417
24
MC1
SOFTWARE
ASN H:246 , TYR H:247
BINDING SITE FOR RESIDUE DMS H 419
25
MC2
SOFTWARE
ARG H:53 , HIS H:54 , LEU H:129 , SER H:130 , HOH H:1892
BINDING SITE FOR RESIDUE DMS H 423
26
MC3
SOFTWARE
TYR H:19 , PHE H:27 , GLU H:117 , HIS H:158 , HIS H:159 , TYR H:168 , ASP H:195 , HIS H:197 , PHE H:225 , ASP H:284 , PRO H:290 , ILE H:291 , ZN H:344 , HOH H:603 , HOH H:1036
BINDING SITE FOR RESIDUE B3N H 407
27
MC4
SOFTWARE
ASP H:193 , ASP H:195 , HIS H:197 , SER H:216 , LEU H:217
BINDING SITE FOR RESIDUE K H 342
28
MC5
SOFTWARE
PHE H:206 , ARG H:209 , VAL H:212 , THR H:243 , HOH H:567
BINDING SITE FOR RESIDUE NA H 343
29
MC6
SOFTWARE
ASP H:195 , HIS H:197 , ASP H:284 , B3N H:407
BINDING SITE FOR RESIDUE ZN H 344
30
MC7
SOFTWARE
PHE H:286 , GLU H:287 , ASP H:289 , SER H:292 , PHE H:294 , HOH H:1859
BINDING SITE FOR RESIDUE K H 345
31
NC2
SOFTWARE
GLY E:210 , HOH E:495 , HOH E:1501 , ILE I:101 , PRO I:102
BINDING SITE FOR RESIDUE DMS I 413
32
NC4
SOFTWARE
GLY E:66 , GLN I:179 , ASP I:183 , ARG I:209
BINDING SITE FOR RESIDUE DMS I 417
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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SCOP Domains
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CATH Domains
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Pfam Domains
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