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3Q9B
Biol. Unit 4
Info
Asym.Unit (698 KB)
Biol.Unit 1 (125 KB)
Biol.Unit 2 (126 KB)
Biol.Unit 3 (126 KB)
Biol.Unit 4 (125 KB)
Biol.Unit 5 (126 KB)
Biol.Unit 6 (125 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF APAH COMPLEXED WITH M344
Authors
:
P. M. Lombardi, D. W. Christianson
Date
:
07 Jan 11 (Deposition) - 02 Mar 11 (Release) - 30 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,I (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,K (1x)
Biol. Unit 4: D,J (1x)
Biol. Unit 5: E,H (1x)
Biol. Unit 6: G,L (1x)
Keywords
:
Hdac, Polyamines, Arginase Fold, Deacetylase, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. M. Lombardi, H. D. Angell, D. A. Whittington, E. F. Flynn, K. R. Rajashankar, D. W. Christianson
Structure Of Prokaryotic Polyamine Deacetylase Reveals Evolutionary Functional Relationships With Eukaryotic Histone Deacetylases .
Biochemistry V. 50 1808 2011
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close entry info
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Na)
1b: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nb)
1c: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nc)
1d: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nd)
1e: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Ne)
1f: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nf)
1g: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Ng)
1h: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nh)
1i: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Ni)
1j: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nj)
1k: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nk)
1l: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nl)
2a: DIMETHYL SULFOXIDE (DMSa)
2aa: DIMETHYL SULFOXIDE (DMSaa)
2ab: DIMETHYL SULFOXIDE (DMSab)
2ac: DIMETHYL SULFOXIDE (DMSac)
2ad: DIMETHYL SULFOXIDE (DMSad)
2ae: DIMETHYL SULFOXIDE (DMSae)
2af: DIMETHYL SULFOXIDE (DMSaf)
2ag: DIMETHYL SULFOXIDE (DMSag)
2ah: DIMETHYL SULFOXIDE (DMSah)
2ai: DIMETHYL SULFOXIDE (DMSai)
2aj: DIMETHYL SULFOXIDE (DMSaj)
2ak: DIMETHYL SULFOXIDE (DMSak)
2al: DIMETHYL SULFOXIDE (DMSal)
2am: DIMETHYL SULFOXIDE (DMSam)
2an: DIMETHYL SULFOXIDE (DMSan)
2ao: DIMETHYL SULFOXIDE (DMSao)
2ap: DIMETHYL SULFOXIDE (DMSap)
2aq: DIMETHYL SULFOXIDE (DMSaq)
2ar: DIMETHYL SULFOXIDE (DMSar)
2as: DIMETHYL SULFOXIDE (DMSas)
2at: DIMETHYL SULFOXIDE (DMSat)
2au: DIMETHYL SULFOXIDE (DMSau)
2av: DIMETHYL SULFOXIDE (DMSav)
2aw: DIMETHYL SULFOXIDE (DMSaw)
2ax: DIMETHYL SULFOXIDE (DMSax)
2ay: DIMETHYL SULFOXIDE (DMSay)
2az: DIMETHYL SULFOXIDE (DMSaz)
2b: DIMETHYL SULFOXIDE (DMSb)
2ba: DIMETHYL SULFOXIDE (DMSba)
2bb: DIMETHYL SULFOXIDE (DMSbb)
2bc: DIMETHYL SULFOXIDE (DMSbc)
2bd: DIMETHYL SULFOXIDE (DMSbd)
2be: DIMETHYL SULFOXIDE (DMSbe)
2bf: DIMETHYL SULFOXIDE (DMSbf)
2bg: DIMETHYL SULFOXIDE (DMSbg)
2bh: DIMETHYL SULFOXIDE (DMSbh)
2bi: DIMETHYL SULFOXIDE (DMSbi)
2bj: DIMETHYL SULFOXIDE (DMSbj)
2bk: DIMETHYL SULFOXIDE (DMSbk)
2bl: DIMETHYL SULFOXIDE (DMSbl)
2bm: DIMETHYL SULFOXIDE (DMSbm)
2bn: DIMETHYL SULFOXIDE (DMSbn)
2bo: DIMETHYL SULFOXIDE (DMSbo)
2bp: DIMETHYL SULFOXIDE (DMSbp)
2bq: DIMETHYL SULFOXIDE (DMSbq)
2br: DIMETHYL SULFOXIDE (DMSbr)
2bs: DIMETHYL SULFOXIDE (DMSbs)
2bt: DIMETHYL SULFOXIDE (DMSbt)
2bu: DIMETHYL SULFOXIDE (DMSbu)
2bv: DIMETHYL SULFOXIDE (DMSbv)
2bw: DIMETHYL SULFOXIDE (DMSbw)
2bx: DIMETHYL SULFOXIDE (DMSbx)
2by: DIMETHYL SULFOXIDE (DMSby)
2bz: DIMETHYL SULFOXIDE (DMSbz)
2c: DIMETHYL SULFOXIDE (DMSc)
2ca: DIMETHYL SULFOXIDE (DMSca)
2cb: DIMETHYL SULFOXIDE (DMScb)
2cc: DIMETHYL SULFOXIDE (DMScc)
2cd: DIMETHYL SULFOXIDE (DMScd)
2ce: DIMETHYL SULFOXIDE (DMSce)
2cf: DIMETHYL SULFOXIDE (DMScf)
2cg: DIMETHYL SULFOXIDE (DMScg)
2ch: DIMETHYL SULFOXIDE (DMSch)
2ci: DIMETHYL SULFOXIDE (DMSci)
2cj: DIMETHYL SULFOXIDE (DMScj)
2ck: DIMETHYL SULFOXIDE (DMSck)
2cl: DIMETHYL SULFOXIDE (DMScl)
2cm: DIMETHYL SULFOXIDE (DMScm)
2cn: DIMETHYL SULFOXIDE (DMScn)
2co: DIMETHYL SULFOXIDE (DMSco)
2cp: DIMETHYL SULFOXIDE (DMScp)
2cq: DIMETHYL SULFOXIDE (DMScq)
2cr: DIMETHYL SULFOXIDE (DMScr)
2cs: DIMETHYL SULFOXIDE (DMScs)
2ct: DIMETHYL SULFOXIDE (DMSct)
2cu: DIMETHYL SULFOXIDE (DMScu)
2cv: DIMETHYL SULFOXIDE (DMScv)
2cw: DIMETHYL SULFOXIDE (DMScw)
2cx: DIMETHYL SULFOXIDE (DMScx)
2cy: DIMETHYL SULFOXIDE (DMScy)
2cz: DIMETHYL SULFOXIDE (DMScz)
2d: DIMETHYL SULFOXIDE (DMSd)
2da: DIMETHYL SULFOXIDE (DMSda)
2db: DIMETHYL SULFOXIDE (DMSdb)
2dc: DIMETHYL SULFOXIDE (DMSdc)
2dd: DIMETHYL SULFOXIDE (DMSdd)
2e: DIMETHYL SULFOXIDE (DMSe)
2f: DIMETHYL SULFOXIDE (DMSf)
2g: DIMETHYL SULFOXIDE (DMSg)
2h: DIMETHYL SULFOXIDE (DMSh)
2i: DIMETHYL SULFOXIDE (DMSi)
2j: DIMETHYL SULFOXIDE (DMSj)
2k: DIMETHYL SULFOXIDE (DMSk)
2l: DIMETHYL SULFOXIDE (DMSl)
2m: DIMETHYL SULFOXIDE (DMSm)
2n: DIMETHYL SULFOXIDE (DMSn)
2o: DIMETHYL SULFOXIDE (DMSo)
2p: DIMETHYL SULFOXIDE (DMSp)
2q: DIMETHYL SULFOXIDE (DMSq)
2r: DIMETHYL SULFOXIDE (DMSr)
2s: DIMETHYL SULFOXIDE (DMSs)
2t: DIMETHYL SULFOXIDE (DMSt)
2u: DIMETHYL SULFOXIDE (DMSu)
2v: DIMETHYL SULFOXIDE (DMSv)
2w: DIMETHYL SULFOXIDE (DMSw)
2x: DIMETHYL SULFOXIDE (DMSx)
2y: DIMETHYL SULFOXIDE (DMSy)
2z: DIMETHYL SULFOXIDE (DMSz)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
3e: POTASSIUM ION (Ke)
3f: POTASSIUM ION (Kf)
3g: POTASSIUM ION (Kg)
3h: POTASSIUM ION (Kh)
3i: POTASSIUM ION (Ki)
3j: POTASSIUM ION (Kj)
3k: POTASSIUM ION (Kk)
3l: POTASSIUM ION (Kl)
3m: POTASSIUM ION (Km)
3n: POTASSIUM ION (Kn)
3o: POTASSIUM ION (Ko)
3p: POTASSIUM ION (Kp)
3q: POTASSIUM ION (Kq)
3r: POTASSIUM ION (Kr)
3s: POTASSIUM ION (Ks)
3t: POTASSIUM ION (Kt)
3u: POTASSIUM ION (Ku)
3v: POTASSIUM ION (Kv)
3w: POTASSIUM ION (Kw)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
4e: SODIUM ION (NAe)
4f: SODIUM ION (NAf)
4g: SODIUM ION (NAg)
4h: SODIUM ION (NAh)
4i: SODIUM ION (NAi)
4j: SODIUM ION (NAj)
4k: SODIUM ION (NAk)
4l: SODIUM ION (NAl)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
B3N
2
Ligand/Ion
4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMINO)-7-OXOHEPTYL]BENZAMIDE
2
DMS
18
Ligand/Ion
DIMETHYL SULFOXIDE
3
K
-1
Ligand/Ion
POTASSIUM ION
4
NA
-1
Ligand/Ion
SODIUM ION
5
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC5 (SOFTWARE)
03: EC5 (SOFTWARE)
04: EC6 (SOFTWARE)
05: EC7 (SOFTWARE)
06: EC8 (SOFTWARE)
07: EC9 (SOFTWARE)
08: FC1 (SOFTWARE)
09: FC2 (SOFTWARE)
10: FC3 (SOFTWARE)
11: FC4 (SOFTWARE)
12: FC5 (SOFTWARE)
13: FC6 (SOFTWARE)
14: FC7 (SOFTWARE)
15: FC8 (SOFTWARE)
16: FC9 (SOFTWARE)
17: GC1 (SOFTWARE)
18: GC2 (SOFTWARE)
19: LC7 (SOFTWARE)
20: LC9 (SOFTWARE)
21: OC2 (SOFTWARE)
22: OC3 (SOFTWARE)
23: OC4 (SOFTWARE)
24: OC5 (SOFTWARE)
25: OC6 (SOFTWARE)
26: OC7 (SOFTWARE)
27: OC8 (SOFTWARE)
28: OC9 (SOFTWARE)
29: PC1 (SOFTWARE)
30: PC2 (SOFTWARE)
31: PC3 (SOFTWARE)
32: PC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
ILE A:101 , PRO A:102 , GLY J:210 , HOH J:410 , HOH J:1458
BINDING SITE FOR RESIDUE DMS A 413
02
AC5
SOFTWARE
GLN A:179 , ALA J:65 , GLY J:66 , ASN J:69
BINDING SITE FOR RESIDUE DMS A 417
03
EC5
SOFTWARE
LEU D:60 , LYS D:61 , HIS D:63 , HOH D:1525
BINDING SITE FOR RESIDUE DMS D 405
04
EC6
SOFTWARE
ASN D:200 , ASP D:204 , LEU D:229 , HOH D:1880 , ARG J:95 , ARG J:96 , THR J:97
BINDING SITE FOR RESIDUE DMS D 411
05
EC7
SOFTWARE
ILE D:101 , PRO D:102 , HOH D:1639 , GLY H:210
BINDING SITE FOR RESIDUE DMS D 413
06
EC8
SOFTWARE
GLU D:275 , ALA D:276 , HOH D:1661
BINDING SITE FOR RESIDUE DMS D 415
07
EC9
SOFTWARE
GLN D:179 , ARG D:209 , ALA H:65 , ASN H:69
BINDING SITE FOR RESIDUE DMS D 417
08
FC1
SOFTWARE
ALA D:245 , ASN D:246 , TYR D:247
BINDING SITE FOR RESIDUE DMS D 419
09
FC2
SOFTWARE
TYR D:207 , GLU D:234 , THR J:97
BINDING SITE FOR RESIDUE DMS D 421
10
FC3
SOFTWARE
ALA D:52 , ARG D:53 , HIS D:54 , ALA D:133
BINDING SITE FOR RESIDUE DMS D 423
11
FC4
SOFTWARE
TYR D:83 , TYR J:19 , GLY J:20
BINDING SITE FOR RESIDUE DMS D 403
12
FC5
SOFTWARE
ARG D:95 , ARG D:96 , THR D:97 , HOH D:1795 , ASN J:200 , ASP J:204
BINDING SITE FOR RESIDUE DMS D 342
13
FC6
SOFTWARE
ARG D:96 , THR D:97 , SER D:98 , TYR J:207 , GLU J:234
BINDING SITE FOR RESIDUE DMS D 343
14
FC7
SOFTWARE
TYR D:19 , PHE D:27 , HIS D:158 , HIS D:159 , TYR D:168 , ASP D:195 , HIS D:197 , PHE D:225 , ASP D:284 , PRO D:290 , ILE D:291 , ZN D:346 , HOH D:568 , HOH D:601 , HOH D:1908
BINDING SITE FOR RESIDUE B3N D 407
15
FC8
SOFTWARE
ASP D:193 , ASP D:195 , HIS D:197 , SER D:216 , LEU D:217
BINDING SITE FOR RESIDUE K D 344
16
FC9
SOFTWARE
PHE D:206 , ARG D:209 , VAL D:212 , THR D:243 , HOH D:586
BINDING SITE FOR RESIDUE NA D 345
17
GC1
SOFTWARE
ASP D:195 , HIS D:197 , ASP D:284 , B3N D:407
BINDING SITE FOR RESIDUE ZN D 346
18
GC2
SOFTWARE
PHE D:286 , GLU D:287 , ASP D:289 , SER D:292 , PHE D:294 , HOH D:1860
BINDING SITE FOR RESIDUE K D 347
19
LC7
SOFTWARE
GLY D:210 , HOH D:1648 , ILE H:101 , PRO H:102 , HOH H:346
BINDING SITE FOR RESIDUE DMS H 413
20
LC9
SOFTWARE
ASN D:69 , GLN H:179 , ARG H:209
BINDING SITE FOR RESIDUE DMS H 417
21
OC2
SOFTWARE
TYR D:19 , GLY D:20 , HOH D:718 , TYR J:83 , GLU J:106
BINDING SITE FOR RESIDUE DMS J 403
22
OC3
SOFTWARE
LEU J:60 , LYS J:61 , HIS J:63 , ASP J:64 , HOH J:1203 , HOH J:1376
BINDING SITE FOR RESIDUE DMS J 405
23
OC4
SOFTWARE
GLY A:210 , HOH A:372 , HOH A:969 , ILE J:101 , PRO J:102
BINDING SITE FOR RESIDUE DMS J 413
24
OC5
SOFTWARE
ILE J:142 , GLU J:275 , ALA J:276 , HOH J:1011
BINDING SITE FOR RESIDUE DMS J 415
25
OC6
SOFTWARE
ASN A:69 , GLN J:179 , ASP J:183 , ARG J:209
BINDING SITE FOR RESIDUE DMS J 417
26
OC7
SOFTWARE
TYR J:247 , ARG J:268
BINDING SITE FOR RESIDUE DMS J 419
27
OC8
SOFTWARE
ARG J:53 , HIS J:54
BINDING SITE FOR RESIDUE DMS J 423
28
OC9
SOFTWARE
TYR J:19 , PHE J:27 , HIS J:158 , HIS J:159 , TYR J:168 , ASP J:195 , HIS J:197 , ASP J:284 , PRO J:290 , ILE J:291 , ZN J:344
BINDING SITE FOR RESIDUE B3N J 407
29
PC1
SOFTWARE
ASP J:193 , ASP J:195 , HIS J:197 , SER J:216 , LEU J:217
BINDING SITE FOR RESIDUE K J 342
30
PC2
SOFTWARE
PHE J:206 , ARG J:209 , VAL J:212 , THR J:243 , HOH J:839
BINDING SITE FOR RESIDUE NA J 343
31
PC3
SOFTWARE
ASP J:195 , HIS J:197 , ASP J:284 , B3N J:407
BINDING SITE FOR RESIDUE ZN J 344
32
PC4
SOFTWARE
PHE J:286 , GLU J:287 , ASP J:289 , SER J:292 , PHE J:294 , HOH J:1875
BINDING SITE FOR RESIDUE K J 345
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(0, 0)
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(mutated residues are only available for the asymmetric unit)
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CATH Domains
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