PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3Q7J
Asym. Unit
Info
Asym.Unit (260 KB)
Biol.Unit 1 (131 KB)
Biol.Unit 2 (129 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
ENGINEERED THERMOPLASMA ACIDOPHILUM F3 FACTOR MIMICS HUMAN AMINOPEPTIDASE N (APN) AS A TARGET FOR ANTICANCER DRUG DEVELOPMENT
Authors
:
J. Su, Q. Wang, J. Feng, C. Zhang, D. Zhu, T. We, W. Xu, L. Gu
Date
:
05 Jan 11 (Deposition) - 27 Jul 11 (Release) - 27 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.91
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Trf3, Inhibitor Fbo, Aminopeptidase, Inhibitor Binding, Hydrolase- Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Su, Q. Wang, J. Feng, C. Zhang, D. Zhu, T. Wei, W. Xu, L. Gu
Engineered Thermoplasma Acidophilum Factor F3 Mimics Human Aminopeptidase N (Apn) As A Target For Anticancer Drug Development
Bioorg. Med. Chem. V. 19 2991 2011
[
close entry info
]
Hetero Components
(2, 3)
Info
All Hetero Components
1a: L-PHENYLALANYL-N6-[(BENZYLOXY)CARB... (FBOa)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FBO
1
Ligand/Ion
L-PHENYLALANYL-N6-[(BENZYLOXY)CARBONYL]-N1-HYDROXY-L-LYSINAMIDE
2
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:265 , GLU A:266 , HIS A:269 , GLU A:288 , FBO A:900
BINDING SITE FOR RESIDUE ZN A 800
2
AC2
SOFTWARE
HIS A:99 , GLN A:101 , ALA A:229 , GLY A:230 , ALA A:231 , GLU A:233 , TYR A:244 , HIS A:265 , GLU A:266 , GLU A:288 , THR A:292 , ARG A:316 , GLU A:348 , TYR A:351 , GLY A:352 , ZN A:800
BINDING SITE FOR RESIDUE FBO A 900
3
AC3
SOFTWARE
GLU B:233 , HIS B:265 , HIS B:269 , GLU B:288
BINDING SITE FOR RESIDUE ZN B 800
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:262-271,B:262-271)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
TRF3_THEAC
262-271
2
A:262-271
B:262-271
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d3q7ja4 (A:490-780)
1b: SCOP_d3q7jb4 (B:490-780)
2a: SCOP_d3q7ja3 (A:415-489)
2b: SCOP_d3q7jb3 (B:415-489)
3a: SCOP_d3q7ja1 (A:1-170)
3b: SCOP_d3q7jb1 (B:1-170)
4a: SCOP_d3q7ja2 (A:171-414)
4b: SCOP_d3q7jb2 (B:171-414)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
automated matches
(39)
Protein domain
:
automated matches
(39)
Thermoplasma acidophilum [TaxId: 273075]
(1)
1a
d3q7ja4
A:490-780
1b
d3q7jb4
B:490-780
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Zn aminopeptidase insert domain
(10)
Family
:
automated matches
(6)
Protein domain
:
automated matches
(6)
Thermoplasma acidophilum [TaxId: 273075]
(1)
2a
d3q7ja3
A:415-489
2b
d3q7jb3
B:415-489
Fold
:
Zn aminopeptidase N-terminal domain
(55)
Superfamily
:
Zn aminopeptidase N-terminal domain
(55)
Family
:
automated matches
(6)
Protein domain
:
automated matches
(6)
Thermoplasma acidophilum [TaxId: 273075]
(1)
3a
d3q7ja1
A:1-170
3b
d3q7jb1
B:1-170
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Thermoplasma acidophilum [TaxId: 273075]
(1)
4a
d3q7ja2
A:171-414
4b
d3q7jb2
B:171-414
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (260 KB)
Header - Asym.Unit
Biol.Unit 1 (131 KB)
Header - Biol.Unit 1
Biol.Unit 2 (129 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3Q7J
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help