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3Q6Q
Asym. Unit
Info
Asym.Unit (221 KB)
Biol.Unit 1 (214 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF P DOMAIN FROM NORWALK VIRUS STRAIN VIETNAM 026 IN COMPLEX WITH DISORDERED HBGA TYPE LEA
Authors
:
G. S. Hansman, C. Biertumpfel, L. Chen, I. Georgiev, J. S. Mclellan, K. K P. D. Kwong
Date
:
03 Jan 11 (Deposition) - 11 May 11 (Release) - 02 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.43
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Norovirus, P-Domain, Capsid, Receptor, Histo Blood Group Antigen (Hbga), Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. S. Hansman, C. Biertumpfel, I. Georgiev, J. S. Mclellan, L. Chen, T. Zhou, K. Katayama, P. D. Kwong
Crystal Structures Of Gii. 10 And Gii. 12 Norovirus Protrudin Domains In Complex With Histo-Blood Group Antigens Reveal Details For A Potential Site Of Vulnerability.
J. Virol. V. 85 6687 2011
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
2a: IMIDAZOLE (IMDa)
2b: IMIDAZOLE (IMDb)
2c: IMIDAZOLE (IMDc)
2d: IMIDAZOLE (IMDd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
16
Ligand/Ion
1,2-ETHANEDIOL
2
IMD
4
Ligand/Ion
IMIDAZOLE
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:32 , HOH A:37 , HOH A:145 , ASN A:309 , LEU A:310 , ASN A:311 , LEU A:325
BINDING SITE FOR RESIDUE EDO A 1
02
AC2
SOFTWARE
HOH A:147 , HOH B:52 , LEU B:279 , THR B:281 , ARG B:287
BINDING SITE FOR RESIDUE EDO B 2
03
AC3
SOFTWARE
HOH B:12 , HOH B:43 , HOH B:161 , ASN B:309 , LEU B:310 , ASN B:311 , LEU B:325
BINDING SITE FOR RESIDUE EDO B 3
04
AC4
SOFTWARE
HOH A:111 , PHE A:445 , PRO A:447 , HOH B:1 , HOH B:213 , ARG B:287 , ARG B:341 , HOH B:632
BINDING SITE FOR RESIDUE EDO B 4
05
AC5
SOFTWARE
HOH A:77 , HOH A:116 , LEU A:279 , THR A:281 , GLY A:282 , ARG A:287
BINDING SITE FOR RESIDUE EDO A 5
06
AC6
SOFTWARE
ARG A:299 , GLY A:300 , SER A:379 , THR A:380
BINDING SITE FOR RESIDUE EDO A 6
07
AC7
SOFTWARE
HOH A:31 , HOH A:44 , HOH A:156 , HOH A:171 , PRO A:243 , PRO A:280 , THR A:281 , PRO B:243 , PRO B:280 , THR B:281
BINDING SITE FOR RESIDUE EDO A 7
08
AC8
SOFTWARE
ASN A:342 , THR A:343 , THR A:345 , PRO A:353 , ASN B:454
BINDING SITE FOR RESIDUE EDO A 8
09
AC9
SOFTWARE
HOH A:86 , HOH A:192 , SER A:415 , THR A:421 , LEU A:422 , ASN A:423 , HOH A:632 , HOH A:688
BINDING SITE FOR RESIDUE EDO A 9
10
BC1
SOFTWARE
LYS A:225 , GLN A:471 , GLU A:472
BINDING SITE FOR RESIDUE EDO A 10
11
BC2
SOFTWARE
GLN A:277 , LEU A:278 , HOH B:117 , GLU B:236 , HOH B:722
BINDING SITE FOR RESIDUE EDO A 11
12
BC3
SOFTWARE
HOH A:47 , HOH A:92 , HOH A:147 , PRO A:245 , ILE A:246 , HOH A:599 , HOH A:627
BINDING SITE FOR RESIDUE EDO A 12
13
BC4
SOFTWARE
HOH A:40 , HIS A:358 , GLU A:359 , HOH A:575 , HOH A:697 , IMD B:19 , GLU B:359 , LYS B:449
BINDING SITE FOR RESIDUE EDO A 13
14
BC5
SOFTWARE
HOH A:133 , GLU A:464 , HIS A:468 , HOH A:617 , HOH A:708
BINDING SITE FOR RESIDUE EDO A 14
15
BC6
SOFTWARE
PHE B:434 , GLU B:437 , ALA B:508 , THR B:534 , LEU B:535 , HOH B:791
BINDING SITE FOR RESIDUE EDO B 15
16
BC7
SOFTWARE
HOH B:63 , GLU B:255 , ALA B:257 , ASP B:409 , TRP B:411 , HOH B:588 , HOH B:598
BINDING SITE FOR RESIDUE EDO B 16
17
BC8
SOFTWARE
LEU A:272 , GLN A:273 , GLY A:274 , THR A:276 , LEU A:325
BINDING SITE FOR RESIDUE IMD A 17
18
BC9
SOFTWARE
LEU B:272 , GLN B:273 , GLY B:274 , THR B:276 , LEU B:325
BINDING SITE FOR RESIDUE IMD B 18
19
CC1
SOFTWARE
EDO A:13 , HIS A:358 , GLU B:359 , TRP B:381 , LYS B:449 , HOH B:787
BINDING SITE FOR RESIDUE IMD B 19
20
CC2
SOFTWARE
ASP B:269 , GLY B:270 , SER B:473 , HOH B:579 , HOH B:803
BINDING SITE FOR RESIDUE IMD B 20
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
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all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Calici_coat_3q6qB01 (B:224-291)
1b: PFAM_Calici_coat_3q6qB02 (B:224-291)
2a: PFAM_Calici_coat_C_3q6qB03 (B:307-538)
2b: PFAM_Calici_coat_C_3q6qB04 (B:307-538)
View:
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Clans
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)
(
)
Families
(
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(
)
Organisms
(
)
(
)
Clan
:
Viral_ssRNA_CP
(106)
Family
:
Calici_coat
(20)
Norwalk virus
(9)
1a
Calici_coat-3q6qB01
B:224-291
1b
Calici_coat-3q6qB02
B:224-291
Clan
:
no clan defined [family: Calici_coat_C]
(19)
Family
:
Calici_coat_C
(19)
Norwalk virus
(9)
2a
Calici_coat_C-3q6qB03
B:307-538
2b
Calici_coat_C-3q6qB04
B:307-538
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (221 KB)
Header - Asym.Unit
Biol.Unit 1 (214 KB)
Header - Biol.Unit 1
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