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3Q67
Asym. Unit
Info
Asym.Unit (225 KB)
Biol.Unit 1 (111 KB)
Biol.Unit 2 (112 KB)
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(1)
Title
:
HUMAN ALDOSE REDUCTASE C298S MUTANT IN COMPLEX WITH NADP+ IN SPACE GROUP P212121
Authors
:
M. R. Sawaya, D. Cascio, G. K. Balendiran
Date
:
30 Dec 10 (Deposition) - 12 Jan 11 (Release) - 20 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Alpha/Beta Barrel, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. K. Balendiran, M. R. Sawaya, F. P. Schwarz, G. Ponniah, R. Cuckovich M. Verma, D. Cascio
The Role Of Cys-298 In Aldose Reductase Function.
J. Biol. Chem. V. 286 6336 2011
[
close entry info
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
1b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAP
2
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2
SO4
8
Ligand/Ion
SULFATE ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:18 , THR A:19 , TRP A:20 , LYS A:21 , ASP A:43 , TYR A:48 , HIS A:110 , SER A:159 , ASN A:160 , GLN A:183 , TYR A:209 , SER A:210 , PRO A:211 , LEU A:212 , GLY A:213 , SER A:214 , PRO A:215 , ASP A:216 , ALA A:245 , ILE A:260 , PRO A:261 , LYS A:262 , SER A:263 , VAL A:264 , THR A:265 , ARG A:268 , GLU A:271 , ASN A:272 , HOH A:326 , HOH A:366 , HOH A:403 , HOH A:441 , HOH A:474 , GLN B:26
BINDING SITE FOR RESIDUE NAP A 318
02
AC2
SOFTWARE
GLN A:26 , HOH A:366 , GLY B:18 , THR B:19 , TRP B:20 , LYS B:21 , ASP B:43 , TYR B:48 , HIS B:110 , SER B:159 , ASN B:160 , GLN B:183 , TYR B:209 , SER B:210 , PRO B:211 , LEU B:212 , GLY B:213 , SER B:214 , PRO B:215 , ASP B:216 , ALA B:245 , ILE B:260 , PRO B:261 , LYS B:262 , SER B:263 , VAL B:264 , THR B:265 , ARG B:268 , GLU B:271 , ASN B:272 , HOH B:322 , HOH B:358 , HOH B:426 , HOH B:438 , HOH B:604
BINDING SITE FOR RESIDUE NAP B 318
03
AC3
SOFTWARE
ARG A:63 , HOH A:581 , HOH A:646 , HIS B:163 , HOH B:590
BINDING SITE FOR RESIDUE SO4 A 316
04
AC4
SOFTWARE
HIS A:163 , HOH A:713 , ARG B:63 , HOH B:406 , HOH B:483 , HOH B:631
BINDING SITE FOR RESIDUE SO4 B 316
05
AC5
SOFTWARE
ALA B:1 , SER B:2 , ARG B:3
BINDING SITE FOR RESIDUE SO4 B 317
06
AC6
SOFTWARE
SER B:281 , SER B:282 , HOH B:441
BINDING SITE FOR RESIDUE SO4 B 319
07
AC7
SOFTWARE
LYS A:239 , SER A:281 , GLN A:283
BINDING SITE FOR RESIDUE SO4 A 317
08
AC8
SOFTWARE
SER A:281 , SER A:282 , HOH A:522
BINDING SITE FOR RESIDUE SO4 A 319
09
AC9
SOFTWARE
ALA A:1 , SER A:2 , ARG A:3
BINDING SITE FOR RESIDUE SO4 A 320
10
BC1
SOFTWARE
LYS B:242 , GLN B:246 , ASP B:277 , HOH B:434 , HOH B:478
BINDING SITE FOR RESIDUE SO4 B 320
[
close Site info
]
SAPs(SNPs)/Variants
(6, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014743 (I14F, chain A/B, )
2: VAR_014744 (H41L, chain A/B, )
3: VAR_014745 (L72V, chain A/B, )
4: VAR_048213 (K89E, chain A/B, )
5: VAR_014746 (G203S, chain A/B, )
6: VAR_014747 (T287I, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014743
I
15
F
ALDR_HUMAN
Polymorphism
5054
A/B
I
14
F
2
UniProt
VAR_014744
H
42
L
ALDR_HUMAN
Polymorphism
5056
A/B
H
41
L
3
UniProt
VAR_014745
L
73
V
ALDR_HUMAN
Polymorphism
5057
A/B
L
72
V
4
UniProt
VAR_048213
K
90
E
ALDR_HUMAN
Polymorphism
2229542
A/B
K
89
E
5
UniProt
VAR_014746
G
204
S
ALDR_HUMAN
Polymorphism
5061
A/B
G
203
S
6
UniProt
VAR_014747
T
288
I
ALDR_HUMAN
Polymorphism
5062
A/B
T
287
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: ALDOKETO_REDUCTASE_1 (A:38-55,B:38-55)
2: ALDOKETO_REDUCTASE_2 (A:144-161,B:144-161)
3: ALDOKETO_REDUCTASE_3 (A:260-275,B:260-275)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOKETO_REDUCTASE_1
PS00798
Aldo/keto reductase family signature 1.
ALDR_HUMAN
39-56
2
A:38-55
B:38-55
2
ALDOKETO_REDUCTASE_2
PS00062
Aldo/keto reductase family signature 2.
ALDR_HUMAN
145-162
2
A:144-161
B:144-161
3
ALDOKETO_REDUCTASE_3
PS00063
Aldo/keto reductase family putative active site signature.
ALDR_HUMAN
261-276
2
A:260-275
B:260-275
[
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Exons
(10, 20)
Info
All Exons
Exon 1.1d (A:0-21 | B:0-21)
Exon 1.2b (A:22-77 | B:22-77)
Exon 1.4b (A:78-116 | B:78-116)
Exon 1.5a (A:117-142 | B:117-142)
Exon 1.5i (A:143-183 | B:143-183)
Exon 1.6 (A:184-219 | B:184-219)
Exon 1.7a (A:219-246 | B:219-246)
Exon 1.7i (A:247-274 | B:247-274)
Exon 1.8a (A:275-302 | B:275-302)
Exon 1.9d (A:302-315 | B:302-315)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1d
02: Boundary 1.1d/1.2b
03: Boundary 1.2b/1.4b
04: Boundary 1.4b/1.5a
05: Boundary 1.5a/1.5i
06: Boundary 1.5i/1.6
07: Boundary 1.6/1.7a
08: Boundary 1.7a/1.7i
09: Boundary 1.7i/1.8a
10: Boundary 1.8a/1.9d
11: Boundary 1.9d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000285930
1d
ENSE00001930160
chr7:
134143894-134143749
146
ALDR_HUMAN
1-22
22
2
A:0-21
B:0-21
22
22
1.2b
ENST00000285930
2b
ENSE00001803238
chr7:
134136505-134136338
168
ALDR_HUMAN
23-78
56
2
A:22-77
B:22-77
56
56
1.4b
ENST00000285930
4b
ENSE00001325879
chr7:
134135654-134135538
117
ALDR_HUMAN
79-117
39
2
A:78-116
B:78-116
39
39
1.5a
ENST00000285930
5a
ENSE00001175544
chr7:
134134549-134134472
78
ALDR_HUMAN
118-143
26
2
A:117-142
B:117-142
26
26
1.5i
ENST00000285930
5i
ENSE00001752942
chr7:
134133871-134133749
123
ALDR_HUMAN
144-184
41
2
A:143-183
B:143-183
41
41
1.6
ENST00000285930
6
ENSE00001175532
chr7:
134133245-134133139
107
ALDR_HUMAN
185-220
36
2
A:184-219
B:184-219
36
36
1.7a
ENST00000285930
7a
ENSE00001625579
chr7:
134132813-134132732
82
ALDR_HUMAN
220-247
28
2
A:219-246
B:219-246
28
28
1.7i
ENST00000285930
7i
ENSE00001795277
chr7:
134132133-134132050
84
ALDR_HUMAN
248-275
28
2
A:247-274
B:247-274
28
28
1.8a
ENST00000285930
8a
ENSE00001675790
chr7:
134130072-134129990
83
ALDR_HUMAN
276-303
28
2
A:275-302
B:275-302
28
28
1.9d
ENST00000285930
9d
ENSE00001174667
chr7:
134127522-134127127
396
ALDR_HUMAN
303-316
14
2
A:302-315
B:302-315
14
14
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3q67a_ (A:)
1b: SCOP_d3q67b_ (B:)
View:
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Classes
(
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Folds
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
Aldo-keto reductases (NADP)
(251)
Protein domain
:
Aldose reductase (aldehyde reductase)
(107)
Human (Homo sapiens) [TaxId: 9606]
(96)
1a
d3q67a_
A:
1b
d3q67b_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Aldo_ket_red_3q67B01 (B:14-293)
1b: PFAM_Aldo_ket_red_3q67B02 (B:14-293)
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Clans
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(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: Aldo_ket_red]
(94)
Family
:
Aldo_ket_red
(94)
Homo sapiens (Human)
(60)
1a
Aldo_ket_red-3q67B01
B:14-293
1b
Aldo_ket_red-3q67B02
B:14-293
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]
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Asym.Unit (225 KB)
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