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3Q44
Asym. Unit
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Asym.Unit (313 KB)
Biol.Unit 1 (307 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF PFA-M1 BOUND TO BESTATIN DERIVATIVE 16
Authors
:
S. Mcgowan, D. C. Greenbaum
Date
:
22 Dec 10 (Deposition) - 16 Mar 11 (Release) - 30 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
M1 Aminopeptidase, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Velmourougane, M. B. Harbut, S. Dalal, S. Mcgowan, C. A. Oellig, N. Meinhardt, J. C. Whisstock, M. Klemba, D. C. Greenbaum
Synthesis Of New (-)-Bestatin-Based Inhibitor Libraries Reveals A Novel Binding Mode In The S1 Pocket Of The Essential Malaria M1 Metalloaminopeptidase.
J. Med. Chem. V. 54 1655 2011
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: N-{(2S,3R)-3-AMINO-4-[4-(BENZYLOXY... (D50a)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: MAGNESIUM ION (MGa)
4a: ZINC ION (ZNa)
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No.
Name
Count
Type
Full Name
1
D50
1
Ligand/Ion
N-{(2S,3R)-3-AMINO-4-[4-(BENZYLOXY)PHENYL]-2-HYDROXYBUTANOYL}-L-LEUCINE
2
GOL
2
Ligand/Ion
GLYCEROL
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
ZN
1
Ligand/Ion
ZINC ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:496 , HIS A:500 , GLU A:519 , D50 A:1086
BINDING SITE FOR RESIDUE ZN A 1
2
AC2
SOFTWARE
ZN A:1 , HOH A:120 , GLU A:319 , VAL A:459 , GLY A:460 , ALA A:461 , GLU A:463 , ARG A:489 , THR A:492 , HIS A:496 , GLU A:497 , HIS A:500 , LYS A:518 , GLU A:519 , MET A:571 , GLU A:572 , TYR A:575 , TYR A:580 , ASN A:1073 , HOH A:1389 , HOH A:1506
BINDING SITE FOR RESIDUE D50 A 1086
3
AC3
SOFTWARE
LYS A:479 , TYR A:880 , HIS A:886 , VAL A:887 , ASP A:888 , GLN A:891 , ARG A:895 , TYR A:925 , HOH A:1880
BINDING SITE FOR RESIDUE GOL A 2
4
AC4
SOFTWARE
HOH A:19 , VAL A:459 , GLY A:460 , ASN A:471 , ASN A:473 , SER A:474 , ARG A:489 , ASN A:994 , ARG A:997 , HOH A:1506 , HOH A:1886
BINDING SITE FOR RESIDUE GOL A 4
5
AC5
SOFTWARE
HOH A:1907 , HOH A:1908 , HOH A:1909 , HOH A:1910 , HOH A:1911
BINDING SITE FOR RESIDUE MG A 9
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:493-502)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
AMP1_PLAFQ
493-502
1
A:493-502
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_M1_3q44A01 (A:205-583)
2a: PFAM_DUF3458_3q44A02 (A:663-1040)
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(
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)
(
)
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M1
(15)
Plasmodium falciparum (isolate FcB1 / Columbia)
(2)
1a
Peptidase_M1-3q44A01
A:205-583
Clan
:
TPR
(230)
Family
:
DUF3458
(4)
Plasmodium falciparum (isolate FcB1 / Columbia)
(2)
2a
DUF3458-3q44A02
A:663-1040
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Chain A
Asymmetric Unit 1
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Asym.Unit (313 KB)
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