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3Q43
Asym. Unit
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Asym.Unit (310 KB)
Biol.Unit 1 (304 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF PFA-M1 BOUND TO BESTATIN DERIVATIVE 15
Authors
:
S. Mcgowan, D. C. Greenbaum
Date
:
22 Dec 10 (Deposition) - 16 Mar 11 (Release) - 30 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
M1 Aminopeptidase, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Velmourougane, M. B. Harbut, S. Dalal, S. Mcgowan, C. A. Oellig, N. Meinhardt, J. C. Whisstock, M. Klemba, D. C. Greenbaum
Synthesis Of New (-)-Bestatin-Based Inhibitor Libraries Reveals A Novel Binding Mode In The S1 Pocket Of The Essential Malaria M1 Metalloaminopeptidase.
J. Med. Chem. V. 54 1655 2011
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: N-[(2S,3R)-3-AMINO-2-HYDROXY-4-(4-... (D66a)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
4a: ZINC ION (ZNa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
D66
1
Ligand/Ion
N-[(2S,3R)-3-AMINO-2-HYDROXY-4-(4-METHOXYPHENYL)BUTANOYL]-L-LEUCINE
2
GOL
4
Ligand/Ion
GLYCEROL
3
MG
4
Ligand/Ion
MAGNESIUM ION
4
ZN
1
Ligand/Ion
ZINC ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:496 , HIS A:500 , GLU A:519 , D66 A:1087
BINDING SITE FOR RESIDUE ZN A 1
02
AC2
SOFTWARE
HOH A:1188
BINDING SITE FOR RESIDUE MG A 1086
03
AC3
SOFTWARE
GLY A:250
BINDING SITE FOR RESIDUE MG A 2
04
AC4
SOFTWARE
HOH A:22 , VAL A:459 , GLY A:460 , ASN A:471 , ASN A:473 , SER A:474 , ARG A:489 , ASN A:994 , ARG A:997 , HOH A:1221
BINDING SITE FOR RESIDUE GOL A 4
05
AC5
SOFTWARE
HOH A:1747
BINDING SITE FOR RESIDUE MG A 3
06
AC6
SOFTWARE
HOH A:120 , ASP A:545 , TYR A:765 , CYS A:768 , THR A:769 , TYR A:772 , TYR A:823 , SER A:826 , PRO A:828
BINDING SITE FOR RESIDUE GOL A 8
07
AC7
SOFTWARE
HIS A:543
BINDING SITE FOR RESIDUE MG A 5
08
AC8
SOFTWARE
HOH A:51 , LYS A:479 , TYR A:880 , VAL A:887 , ASP A:888 , GLN A:891 , ARG A:895 , TYR A:925 , HOH A:1101
BINDING SITE FOR RESIDUE GOL A 6
09
AC9
SOFTWARE
HIS A:653 , LYS A:676 , TYR A:741 , ASN A:835 , PHE A:836 , HOH A:1153 , HOH A:1324
BINDING SITE FOR RESIDUE GOL A 7
10
BC1
SOFTWARE
ZN A:1 , GLN A:317 , GLU A:319 , VAL A:459 , GLY A:460 , ALA A:461 , GLU A:463 , ARG A:489 , THR A:492 , HIS A:496 , GLU A:497 , HIS A:500 , LYS A:518 , GLU A:519 , TYR A:575 , TYR A:580 , HOH A:1173 , HOH A:1220 , HOH A:1221
BINDING SITE FOR RESIDUE D66 A 1087
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:493-502)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
AMP1_PLAFQ
493-502
1
A:493-502
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_M1_3q43A01 (A:205-583)
2a: PFAM_DUF3458_3q43A02 (A:663-1040)
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Clans
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)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M1
(15)
Plasmodium falciparum (isolate FcB1 / Columbia)
(2)
1a
Peptidase_M1-3q43A01
A:205-583
Clan
:
TPR
(230)
Family
:
DUF3458
(4)
Plasmodium falciparum (isolate FcB1 / Columbia)
(2)
2a
DUF3458-3q43A02
A:663-1040
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Chain A
Asymmetric Unit 1
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Asym.Unit (310 KB)
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