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3Q33
Asym. Unit
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Asym.Unit (223 KB)
Biol.Unit 1 (430 KB)
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(1)
Title
:
STRUCTURE OF THE RTT109-ACCOA/VPS75 COMPLEX AND IMPLICATIONS FOR CHAPERONE-MEDIATED HISTONE ACETYLATION
Authors
:
Y. Tang, H. Yuan, K. Meeth, R. Marmorstein
Date
:
21 Dec 10 (Deposition) - 02 Feb 11 (Release) - 18 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,D
Biol. Unit 1: A,B,D (2x)
Keywords
:
Rtt109:Vps75=2:2 Stoichiometry Complex, Histone Acetyltransferase, With Acetyl Coenzyme A (Acoa) Bound, Autoacetylation On Rtt109 Lys290, Nuclear, Transferase-Chaperone-Transcription Regulator Complex, Transferase-Chaperone Complex, Transferase, Chaperone-Gene Regulation Complex, Transferase, Chaperone-Gene Regulation Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Tang, M. A. Holbert, N. Delgoshaie, H. Wurtele, B. Guillemette, K. Meeth, H. Yuan, P. Drogaris, E. H. Lee, C. Durette, P. Thibault, A. Verreault, P. A. Cole, R. Marmorstein
Structure Of The Rtt109-Accoa/Vps75 Complex And Implication For Chaperone-Mediated Histone Acetylation.
Structure V. 19 221 2011
(for further references see the
PDB file header
)
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: ACETYL COENZYME *A (ACOa)
2a: N(6)-ACETYLLYSINE (ALYa)
3a: 1,2-ETHANEDIOL (EDOa)
4a: AMINO GROUP (NH2a)
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No.
Name
Count
Type
Full Name
1
ACO
1
Ligand/Ion
ACETYL COENZYME *A
2
ALY
1
Mod. Amino Acid
N(6)-ACETYLLYSINE
3
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
4
NH2
1
Mod. Amino Acid
AMINO GROUP
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:367 , GLY D:13 , LYS D:14
BINDING SITE FOR RESIDUE NH2 D 15
2
AC2
SOFTWARE
VAL A:85 , SER A:86 , ALA A:88 , ASP A:89 , THR A:90 , VAL A:98 , VAL A:100 , ARG A:101 , PHE A:192 , PRO A:195 , ALA A:196 , TYR A:199 , LYS A:210 , HIS A:211 , LEU A:213 , LEU A:218 , TRP A:221 , TRP A:222 , EDO A:502
BINDING SITE FOR RESIDUE ACO A 501
3
AC3
SOFTWARE
SER A:86 , PHE A:192 , ARG A:194 , TYR A:199 , ACO A:501
BINDING SITE FOR RESIDUE EDO A 502
4
AC4
SOFTWARE
LYS A:363 , GLY A:367 , GLU A:368 , GLU A:369 , ASN B:70 , ILE B:72 , HIS B:196 , SER B:199 , NH2 D:15
BINDING SITE FOR CHAIN D OF HISTONE H3
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: RTT109_HAT (A:2-404)
2: HISTONE_H3_1 (D:14-14)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RTT109_HAT
PS51728
Rtt109-type histone acetyltransferase (HAT) domain profile.
RT109_YEAST
2-404
1
A:2-404
2
HISTONE_H3_1
PS00322
Histone H3 signature 1.
H3_YEAST
15-21
1
D:14-14
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Exons
(1, 1)
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All Exons
Exon 1.1 (D:11-15)
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1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YNL031C
1
YNL031C.1
XIV:576052-575642
411
H3_YEAST
1-136
136
1
D:11-15
5
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SCOP Domains
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CATH Domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_KAT11_3q33A01 (A:3-404)
2a: PFAM_NAP_3q33B01 (B:9-220)
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Clans
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)
Clan
:
no clan defined [family: KAT11]
(7)
Family
:
KAT11
(7)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(7)
1a
KAT11-3q33A01
A:3-404
Clan
:
no clan defined [family: NAP]
(6)
Family
:
NAP
(6)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(6)
2a
NAP-3q33B01
B:9-220
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