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3Q2W
Biol. Unit 1
Info
Asym.Unit (102 KB)
Biol.Unit 1 (182 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MOUSE N-CADHERIN ECTODOMAIN
Authors
:
X. Jin, L. Shapiro
Date
:
20 Dec 10 (Deposition) - 23 Feb 11 (Release) - 23 Feb 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Cadherin, Cell Adhesion, Calcium Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. J. Harrison, X. Jin, S. Hong, F. Bahna, G. Ahlsen, J. Brasch, Y. Wu, J. Vendome, K. Felsovalyi, C. M. Hampton, R. B. Troyanovsky, A. Ben-Shaul, J. Frank, S. M. Troyanovsky, L. Shapiro, B. Honig
The Extracellular Architecture Of Adherens Junctions Revealed By Crystal Structures Of Type I Cadherins.
Structure V. 19 244 2011
[
close entry info
]
Hetero Components
(2, 32)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
MAN
18
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
14
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:11 , ASP A:67 , GLU A:69 , ASP A:103
BINDING SITE FOR RESIDUE CA A 601
02
AC2
SOFTWARE
GLU A:11 , GLU A:69 , ASP A:100 , MET A:101 , ASP A:103 , ASP A:136
BINDING SITE FOR RESIDUE CA A 602
03
AC3
SOFTWARE
ASN A:102 , ASN A:104 , ASP A:134 , ASP A:136 , ASN A:142 , ASP A:194
BINDING SITE FOR RESIDUE CA A 603
04
AC4
SOFTWARE
GLU A:119 , GLU A:181 , ASP A:215 , VAL A:216 , ASP A:218 , ASP A:250
BINDING SITE FOR RESIDUE CA A 604
05
AC5
SOFTWARE
ASN A:217 , ASN A:219 , ASP A:248 , ASP A:250 , ALA A:256 , ASN A:307
BINDING SITE FOR RESIDUE CA A 605
06
AC6
SOFTWARE
GLU A:119 , ASP A:179 , GLU A:181 , ASP A:218
BINDING SITE FOR RESIDUE CA A 606
07
AC7
SOFTWARE
GLU A:234 , ASP A:292 , GLU A:294 , GLU A:334
BINDING SITE FOR RESIDUE CA A 607
08
AC8
SOFTWARE
GLU A:234 , GLU A:294 , ASP A:331 , VAL A:332 , GLU A:334 , ASP A:366
BINDING SITE FOR RESIDUE CA A 608
09
AC9
SOFTWARE
ASN A:333 , GLU A:334 , ASP A:364 , ASP A:366 , GLN A:371 , ASP A:420
BINDING SITE FOR RESIDUE CA A 609
10
BC1
SOFTWARE
GLU A:349 , GLU A:403 , ASP A:438 , ILE A:439 , ASP A:441 , ASP A:470
BINDING SITE FOR RESIDUE CA A 610
11
BC2
SOFTWARE
GLU A:349 , ASP A:401 , GLU A:403 , ASP A:441
BINDING SITE FOR RESIDUE CA A 611
12
BC3
SOFTWARE
ASN A:440 , ASN A:442 , ASP A:468 , ASP A:470 , ASN A:474 , ASP A:525
BINDING SITE FOR RESIDUE CA A 612
13
BC4
SOFTWARE
ILE A:189 , THR A:206 , SER A:532 , ASN A:533 , MAN A:702
BINDING SITE FOR RESIDUE MAN A 701
14
BC5
SOFTWARE
GLN A:111 , VAL A:112 , THR A:208 , MAN A:701
BINDING SITE FOR RESIDUE MAN A 702
15
BC6
SOFTWARE
LEU A:109 , THR A:129 , THR A:131
BINDING SITE FOR RESIDUE MAN A 703
16
BC7
SOFTWARE
TYR A:229 , VAL A:300 , SER A:326
BINDING SITE FOR RESIDUE MAN A 705
17
BC8
SOFTWARE
THR A:227 , THR A:324
BINDING SITE FOR RESIDUE MAN A 706
18
BC9
SOFTWARE
HIS A:317 , PRO A:318 , THR A:322
BINDING SITE FOR RESIDUE MAN A 707
19
CC1
SOFTWARE
SER A:427 , MAN A:709
BINDING SITE FOR RESIDUE MAN A 708
20
CC2
SOFTWARE
THR A:429 , MAN A:708 , MAN A:710
BINDING SITE FOR RESIDUE MAN A 709
21
CC3
SOFTWARE
THR A:429 , THR A:431 , MAN A:709
BINDING SITE FOR RESIDUE MAN A 710
22
CC4
SOFTWARE
VAL A:112 , ASN A:114
BINDING SITE FOR RESIDUE NAG A 801
23
CC5
SOFTWARE
ASN A:84 , ASN A:166 , NAG A:803
BINDING SITE FOR RESIDUE NAG A 802
24
CC6
SOFTWARE
NAG A:802
BINDING SITE FOR RESIDUE NAG A 803
25
CC7
SOFTWARE
ASN A:243 , ASP A:282
BINDING SITE FOR RESIDUE NAG A 804
26
CC8
SOFTWARE
ASN A:409 , ILE A:411 , ASN A:413 , GLN A:433 , NAG A:806
BINDING SITE FOR RESIDUE NAG A 805
27
CC9
SOFTWARE
ASN A:409 , NAG A:805
BINDING SITE FOR RESIDUE NAG A 806
28
DC1
SOFTWARE
ASN A:492 , TRP A:493 , GLU A:518
BINDING SITE FOR RESIDUE NAG A 807
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: CADHERIN_2 (A:445-542)
2: CADHERIN_1 (A:434-444)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CADHERIN_2
PS50268
Cadherins domain profile.
CADH2_MOUSE
160-267
268-382
383-497
498-605
604-710
10
A:1-108
A:109-223
A:224-338
A:339-446
A:445-542
2
CADHERIN_1
PS00232
Cadherin domain signature.
CADH2_MOUSE
255-265
370-380
593-603
6
A:96-106
A:211-221
A:434-444
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_Cadherin_3q2wA01 (A:449-542)
1b: PFAM_Cadherin_3q2wA02 (A:449-542)
1c: PFAM_Cadherin_3q2wA03 (A:449-542)
1d: PFAM_Cadherin_3q2wA04 (A:449-542)
1e: PFAM_Cadherin_3q2wA05 (A:449-542)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
Cadherin
(41)
Mus musculus (Mouse)
(26)
1a
Cadherin-3q2wA01
A:449-542
1b
Cadherin-3q2wA02
A:449-542
1c
Cadherin-3q2wA03
A:449-542
1d
Cadherin-3q2wA04
A:449-542
1e
Cadherin-3q2wA05
A:449-542
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]
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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