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3Q2W
Asym. Unit
Info
Asym.Unit (102 KB)
Biol.Unit 1 (182 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MOUSE N-CADHERIN ECTODOMAIN
Authors
:
X. Jin, L. Shapiro
Date
:
20 Dec 10 (Deposition) - 23 Feb 11 (Release) - 23 Feb 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Cadherin, Cell Adhesion, Calcium Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. J. Harrison, X. Jin, S. Hong, F. Bahna, G. Ahlsen, J. Brasch, Y. Wu, J. Vendome, K. Felsovalyi, C. M. Hampton, R. B. Troyanovsky, A. Ben-Shaul, J. Frank, S. M. Troyanovsky, L. Shapiro, B. Honig
The Extracellular Architecture Of Adherens Junctions Revealed By Crystal Structures Of Type I Cadherins.
Structure V. 19 244 2011
[
close entry info
]
Hetero Components
(3, 28)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
12
Ligand/Ion
CALCIUM ION
2
MAN
9
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
7
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:11 , ASP A:67 , GLU A:69 , ASP A:103
BINDING SITE FOR RESIDUE CA A 601
02
AC2
SOFTWARE
GLU A:11 , GLU A:69 , ASP A:100 , MET A:101 , ASP A:103 , ASP A:136
BINDING SITE FOR RESIDUE CA A 602
03
AC3
SOFTWARE
ASN A:102 , ASN A:104 , ASP A:134 , ASP A:136 , ASN A:142 , ASP A:194
BINDING SITE FOR RESIDUE CA A 603
04
AC4
SOFTWARE
GLU A:119 , GLU A:181 , ASP A:215 , VAL A:216 , ASP A:218 , ASP A:250
BINDING SITE FOR RESIDUE CA A 604
05
AC5
SOFTWARE
ASN A:217 , ASN A:219 , ASP A:248 , ASP A:250 , ALA A:256 , ASN A:307
BINDING SITE FOR RESIDUE CA A 605
06
AC6
SOFTWARE
GLU A:119 , ASP A:179 , GLU A:181 , ASP A:218
BINDING SITE FOR RESIDUE CA A 606
07
AC7
SOFTWARE
GLU A:234 , ASP A:292 , GLU A:294 , GLU A:334
BINDING SITE FOR RESIDUE CA A 607
08
AC8
SOFTWARE
GLU A:234 , GLU A:294 , ASP A:331 , VAL A:332 , GLU A:334 , ASP A:366
BINDING SITE FOR RESIDUE CA A 608
09
AC9
SOFTWARE
ASN A:333 , GLU A:334 , ASP A:364 , ASP A:366 , GLN A:371 , ASP A:420
BINDING SITE FOR RESIDUE CA A 609
10
BC1
SOFTWARE
GLU A:349 , GLU A:403 , ASP A:438 , ILE A:439 , ASP A:441 , ASP A:470
BINDING SITE FOR RESIDUE CA A 610
11
BC2
SOFTWARE
GLU A:349 , ASP A:401 , GLU A:403 , ASP A:441
BINDING SITE FOR RESIDUE CA A 611
12
BC3
SOFTWARE
ASN A:440 , ASN A:442 , ASP A:468 , ASP A:470 , ASN A:474 , ASP A:525
BINDING SITE FOR RESIDUE CA A 612
13
BC4
SOFTWARE
ILE A:189 , THR A:206 , SER A:532 , ASN A:533 , MAN A:702
BINDING SITE FOR RESIDUE MAN A 701
14
BC5
SOFTWARE
GLN A:111 , VAL A:112 , THR A:208 , MAN A:701
BINDING SITE FOR RESIDUE MAN A 702
15
BC6
SOFTWARE
LEU A:109 , THR A:129 , THR A:131
BINDING SITE FOR RESIDUE MAN A 703
16
BC7
SOFTWARE
TYR A:229 , VAL A:300 , SER A:326
BINDING SITE FOR RESIDUE MAN A 705
17
BC8
SOFTWARE
THR A:227 , THR A:324
BINDING SITE FOR RESIDUE MAN A 706
18
BC9
SOFTWARE
HIS A:317 , PRO A:318 , THR A:322
BINDING SITE FOR RESIDUE MAN A 707
19
CC1
SOFTWARE
SER A:427 , MAN A:709
BINDING SITE FOR RESIDUE MAN A 708
20
CC2
SOFTWARE
THR A:429 , MAN A:708 , MAN A:710
BINDING SITE FOR RESIDUE MAN A 709
21
CC3
SOFTWARE
THR A:429 , THR A:431 , MAN A:709
BINDING SITE FOR RESIDUE MAN A 710
22
CC4
SOFTWARE
VAL A:112 , ASN A:114
BINDING SITE FOR RESIDUE NAG A 801
23
CC5
SOFTWARE
ASN A:84 , ASN A:166 , NAG A:803
BINDING SITE FOR RESIDUE NAG A 802
24
CC6
SOFTWARE
NAG A:802
BINDING SITE FOR RESIDUE NAG A 803
25
CC7
SOFTWARE
ASN A:243 , ASP A:282
BINDING SITE FOR RESIDUE NAG A 804
26
CC8
SOFTWARE
ASN A:409 , ILE A:411 , ASN A:413 , GLN A:433 , NAG A:806
BINDING SITE FOR RESIDUE NAG A 805
27
CC9
SOFTWARE
ASN A:409 , NAG A:805
BINDING SITE FOR RESIDUE NAG A 806
28
DC1
SOFTWARE
ASN A:492 , TRP A:493 , GLU A:518
BINDING SITE FOR RESIDUE NAG A 807
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: CADHERIN_2 (A:1-108|A:109-223|A:224-338|A:339-...)
2: CADHERIN_1 (A:96-106|A:211-221|A:434-444)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CADHERIN_2
PS50268
Cadherins domain profile.
CADH2_MOUSE
160-267
268-382
383-497
498-605
604-710
5
A:1-108
A:109-223
A:224-338
A:339-446
A:445-542
2
CADHERIN_1
PS00232
Cadherin domain signature.
CADH2_MOUSE
255-265
370-380
593-603
3
A:96-106
A:211-221
A:434-444
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_Cadherin_3q2wA01 (A:449-542)
1b: PFAM_Cadherin_3q2wA02 (A:449-542)
1c: PFAM_Cadherin_3q2wA03 (A:449-542)
1d: PFAM_Cadherin_3q2wA04 (A:449-542)
1e: PFAM_Cadherin_3q2wA05 (A:449-542)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
Cadherin
(41)
Mus musculus (Mouse)
(26)
1a
Cadherin-3q2wA01
A:449-542
1b
Cadherin-3q2wA02
A:449-542
1c
Cadherin-3q2wA03
A:449-542
1d
Cadherin-3q2wA04
A:449-542
1e
Cadherin-3q2wA05
A:449-542
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]
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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