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3Q2I
Asym. Unit
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Asym.Unit (69 KB)
Biol.Unit 1 (487 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE WLBA DEHYDROGNASE FROM CHROMOBACTRIUM VIOLACEUM IN COMPLEX WITH NADH AND UDP-GLCNACA AT 1.50 A RESOLUTION
Authors
:
H. M. Holden, J. B. Thoden
Date
:
20 Dec 10 (Deposition) - 19 Jan 11 (Release) - 06 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (8x)
Keywords
:
Rossmann Fold, Dehydrogenase, Udp-Sugar Binding, Nad Binding, Oxidoreductase
(Keyword Search:
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Reference
:
J. B. Thoden, H. M. Holden
Biochemical And Structural Characterization Of Wlba From Bordetella Pertussis And Chromobacterium Violaceum: Enzymes Required For The Biosynthesis Of 2, 3-Diacetamido-2, 3-Dideoxy-D-Mannuronic Acid.
Biochemistry V. 50 1483 2011
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: (2S,3S,4R,5R,6R)-5-ACETAMIDO-6-[[[... (HP7a)
4a: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIa)
3a: SODIUM ION (NAa)
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No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
HP7
1
Ligand/Ion
(2S,3S,4R,5R,6R)-5-ACETAMIDO-6-[[[(2R,3S,4R,5R)-5-(2,4-DIOXOPYRIMIDIN-1-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL]OXY-HYDROXY-PHOSPHORYL]OXY-3,4-DIHYDROXY-OXANE-2-CARBOXYLIC ACID
3
NA
1
Ligand/Ion
SODIUM ION
4
NAI
1
Ligand/Ion
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
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Sites
(4, 4)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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Description
1
AC1
SOFTWARE
VAL A:17 , GLY A:18 , CYS A:19 , GLY A:20 , ARG A:21 , ILE A:22 , ASP A:44 , ILE A:45 , LYS A:51 , THR A:80 , THR A:81 , PRO A:82 , SER A:83 , LEU A:85 , HIS A:86 , GLN A:89 , GLU A:103 , LYS A:104 , GLN A:132 , TRP A:175 , ARG A:176 , HIS A:192 , HOH A:360 , HOH A:423 , HOH A:490 , HOH A:520 , HOH A:527 , HOH A:581 , HOH A:582 , HOH A:584
BINDING SITE FOR RESIDUE NAI A 500
2
AC2
SOFTWARE
LYS A:104 , ASN A:133 , TRP A:163 , THR A:164 , ARG A:165 , PRO A:166 , TYR A:169 , ASN A:188 , GLN A:189 , HIS A:192 , LYS A:247 , ASN A:248 , HOH A:395 , HOH A:424 , HOH A:444 , HOH A:446 , HOH A:481 , HOH A:521 , HOH A:608
BINDING SITE FOR RESIDUE HP7 A 550
3
AC3
SOFTWARE
ARG A:263 , GLY A:266 , GLN A:273 , HOH A:564
BINDING SITE FOR RESIDUE CL A 352
4
AC4
SOFTWARE
THR A:211 , HOH A:362 , HOH A:400 , HOH A:432 , HOH A:512
BINDING SITE FOR RESIDUE NA A 353
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SAPs(SNPs)/Variants
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_GFO_IDH_MocA_3q2iA01 (A:12-131)
2a: PFAM_GFO_IDH_MocA_C_3q2iA02 (A:143-258)
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Clan
:
NADP_Rossmann
(1239)
Family
:
GFO_IDH_MocA
(25)
Chromobacterium violaceum
(2)
1a
GFO_IDH_MocA-3q2iA01
A:12-131
Clan
:
ox_reductase_C
(19)
Family
:
GFO_IDH_MocA_C
(19)
Chromobacterium violaceum
(1)
2a
GFO_IDH_MocA_C-3q2iA02
A:143-258
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Asymmetric Unit 1
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