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3Q2H
Asym. Unit
Info
Asym.Unit (200 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (98 KB)
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(1)
Title
:
ADAMTS1 IN COMPLEX WITH N-HYDROXYFORMAMIDE INHIBITORS OF ADAM-TS4
Authors
:
S. Gerhardt, D. Hargreaves
Date
:
20 Dec 10 (Deposition) - 30 Mar 11 (Release) - 30 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.33
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Adamts1 Zn-Metalloprotease, Disintegrin, Metalloproteinase, Thrombospondin Motifs, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. De Savi, A. Pape, J. G. Cumming, A. Ting, P. D. Smith, J. N. Burrows, M. Mills, C. Davies, S. Lamont, D. Milne, C. Cook, P. Moore, Y. Sawyer, S. Gerhardt
The Design And Synthesis Of Novel N-Hydroxyformamide Inhibitors Of Adam-Ts4 For The Treatment Of Osteoarthritis
Bioorg. Med. Chem. Lett. V. 21 1376 2011
[
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Hetero Components
(6, 29)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
4a: NICKEL (II) ION (NIa)
4b: NICKEL (II) ION (NIb)
4c: NICKEL (II) ION (NIc)
4d: NICKEL (II) ION (NId)
4e: NICKEL (II) ION (NIe)
4f: NICKEL (II) ION (NIf)
4g: NICKEL (II) ION (NIg)
4h: NICKEL (II) ION (NIh)
4i: NICKEL (II) ION (NIi)
4j: NICKEL (II) ION (NIj)
4k: NICKEL (II) ION (NIk)
4l: NICKEL (II) ION (NIl)
4m: NICKEL (II) ION (NIm)
4n: NICKEL (II) ION (NIn)
5a: N-[(2S,4S)-1-({4-[2-(3,5-DIMETHYL-... (QHFa)
5b: N-[(2S,4S)-1-({4-[2-(3,5-DIMETHYL-... (QHFb)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
4
Ligand/Ion
CADMIUM ION
2
MG
3
Ligand/Ion
MAGNESIUM ION
3
NA
4
Ligand/Ion
SODIUM ION
4
NI
14
Ligand/Ion
NICKEL (II) ION
5
QHF
2
Ligand/Ion
N-[(2S,4S)-1-({4-[2-(3,5-DIMETHYL-1,2-OXAZOL-4-YL)ETHYL]PIPERIDIN-1-YL}SULFONYL)-4-(5-FLUOROPYRIMIDIN-2-YL)-2-METHYLPENTAN-2-YL]-N-HYDROXYFORMAMIDE
6
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
QHF A:1 , HIS A:149 , HIS A:153 , HIS A:159
BINDING SITE FOR RESIDUE ZN A 401
02
AC2
SOFTWARE
GLU A:9 , ASP A:92 , ASP A:213
BINDING SITE FOR RESIDUE CD A 501
03
AC3
SOFTWARE
GLU A:63 , GLU A:68 , HOH A:351
BINDING SITE FOR RESIDUE CD A 502
04
AC4
SOFTWARE
GLU A:242 , HIS B:61
BINDING SITE FOR RESIDUE NI A 503
05
AC5
SOFTWARE
HIS A:28 , HOH A:334 , ASP B:231
BINDING SITE FOR RESIDUE NI A 504
06
AC6
SOFTWARE
GLU A:9 , ASP A:92 , ASP A:99 , CYS A:210 , ASP A:213 , HOH A:328
BINDING SITE FOR RESIDUE NI A 601
07
AC7
SOFTWARE
ASP A:231 , HOH A:332 , HIS B:28
BINDING SITE FOR RESIDUE CD A 602
08
AC8
SOFTWARE
HIS A:61 , HOH A:330
BINDING SITE FOR RESIDUE NI A 607
09
AC9
SOFTWARE
GLU A:68 , VAL A:69 , HOH A:358
BINDING SITE FOR RESIDUE NI A 609
10
BC1
SOFTWARE
LYS A:56 , HIS A:87
BINDING SITE FOR RESIDUE MG A 610
11
BC2
SOFTWARE
HIS A:176 , HOH A:319
BINDING SITE FOR RESIDUE NI A 611
12
BC3
SOFTWARE
GLU A:242 , ASP A:243 , HOH A:365 , HIS B:61
BINDING SITE FOR RESIDUE NI A 612
13
BC4
SOFTWARE
HIS A:246
BINDING SITE FOR RESIDUE NI A 613
14
BC5
SOFTWARE
HIS A:273 , LEU B:267
BINDING SITE FOR RESIDUE NI A 615
15
BC6
SOFTWARE
HIS A:187 , ASP A:278 , ASN A:290
BINDING SITE FOR RESIDUE MG A 621
16
BC7
SOFTWARE
ASP A:108 , LEU A:109 , CYS A:115 , THR A:117 , GLU A:137
BINDING SITE FOR RESIDUE NA A 701
17
BC8
SOFTWARE
ASP A:108 , CYS A:115
BINDING SITE FOR RESIDUE NA A 703
18
BC9
SOFTWARE
THR A:117 , LEU A:118 , GLY A:119 , MET A:120 , ALA A:121 , VAL A:123 , GLN A:142 , PHE A:145 , THR A:146 , HIS A:149 , GLU A:150 , HIS A:153 , HIS A:159 , SER A:180 , LEU A:182 , HOH A:363 , ZN A:401
BINDING SITE FOR RESIDUE QHF A 1
19
CC1
SOFTWARE
QHF B:2 , HIS B:149 , HIS B:153 , HIS B:159
BINDING SITE FOR RESIDUE ZN B 402
20
CC2
SOFTWARE
HIS A:61 , GLU B:242 , ASP B:243 , HOH B:311
BINDING SITE FOR RESIDUE NI B 604
21
CC3
SOFTWARE
GLU B:9 , ASP B:92 , ASP B:213 , LYS B:214
BINDING SITE FOR RESIDUE CD B 605
22
CC4
SOFTWARE
GLU B:9 , ASP B:92 , ASP B:99 , CYS B:210 , ASP B:213 , HOH B:302
BINDING SITE FOR RESIDUE NI B 606
23
CC5
SOFTWARE
HIS B:187 , ASP B:278 , ASN B:290
BINDING SITE FOR RESIDUE MG B 616
24
CC6
SOFTWARE
HIS B:176 , HOH B:306
BINDING SITE FOR RESIDUE NI B 617
25
CC7
SOFTWARE
ASN B:205 , HIS B:207
BINDING SITE FOR RESIDUE NI B 618
26
CC8
SOFTWARE
HIS B:246
BINDING SITE FOR RESIDUE NI B 619
27
CC9
SOFTWARE
ASP B:108 , LEU B:109 , THR B:117 , GLU B:137 , NA B:704
BINDING SITE FOR RESIDUE NA B 702
28
DC1
SOFTWARE
ASP B:108 , CYS B:115 , NA B:702
BINDING SITE FOR RESIDUE NA B 704
29
DC2
SOFTWARE
THR B:117 , LEU B:118 , GLY B:119 , MET B:120 , ALA B:121 , VAL B:123 , PHE B:145 , THR B:146 , HIS B:149 , GLU B:150 , HIS B:153 , HIS B:159 , LEU B:182 , PHE B:274 , ZN B:402
BINDING SITE FOR RESIDUE QHF B 2
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: ADAM_MEPRO (A:6-215,B:6-215)
2: ZINC_PROTEASE (A:146-155,B:146-155)
3: TSP1 (A:298-299,B:298-299|-|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADAM_MEPRO
PS50215
ADAM type metalloprotease domain profile.
ATS1_HUMAN
258-467
2
A:6-215
B:6-215
2
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
ATS1_HUMAN
398-407
2
A:146-155
B:146-155
3
TSP1
PS50092
Thrombospondin type-1 (TSP1) repeat profile.
ATS1_HUMAN
559-614
908-967
854-905
2
A:298-299
B:298-299
-
-
[
close PROSITE info
]
Exons
(5, 10)
Info
All Exons
Exon 1.5 (A:4-107 | B:4-107)
Exon 1.6c (A:108-152 | B:108-152)
Exon 1.7d (A:152-208 (gaps) | B:152-208 (gaps...)
Exon 1.8a (A:208-296 (gaps) | B:208-296 (gaps...)
Exon 1.8d (A:297-299 | B:297-300)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.5
2: Boundary 1.5/1.6c
3: Boundary 1.6c/1.7d
4: Boundary 1.7d/1.8a
5: Boundary 1.8a/1.8d
6: Boundary 1.8d/1.9a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000284984
1
ENSE00001017374
chr21:
28217728-28216544
1185
ATS1_HUMAN
1-244
244
0
-
-
1.5
ENST00000284984
5
ENSE00001017377
chr21:
28215004-28214658
347
ATS1_HUMAN
244-359
116
2
A:4-107
B:4-107
104
104
1.6c
ENST00000284984
6c
ENSE00001017373
chr21:
28214309-28214177
133
ATS1_HUMAN
360-404
45
2
A:108-152
B:108-152
45
45
1.7d
ENST00000284984
7d
ENSE00001017382
chr21:
28213484-28213317
168
ATS1_HUMAN
404-460
57
2
A:152-208 (gaps)
B:152-208 (gaps)
57
57
1.8a
ENST00000284984
8a
ENSE00001017378
chr21:
28212881-28212595
287
ATS1_HUMAN
460-555
96
2
A:208-296 (gaps)
B:208-296 (gaps)
89
89
1.8d
ENST00000284984
8d
ENSE00001247753
chr21:
28212380-28212194
187
ATS1_HUMAN
556-618
63
2
A:297-299
B:297-300
3
4
1.9a
ENST00000284984
9a
ENSE00001017375
chr21:
28212081-28211906
176
ATS1_HUMAN
618-676
59
0
-
-
1.9c
ENST00000284984
9c
ENSE00001247815
chr21:
28210933-28210758
176
ATS1_HUMAN
677-735
59
0
-
-
1.10b
ENST00000284984
10b
ENSE00001923806
chr21:
28210597-28208606
1992
ATS1_HUMAN
735-967
233
0
-
-
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Reprolysin_3q2hB01 (B:6-215)
1b: PFAM_Reprolysin_3q2hB02 (B:6-215)
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Clans
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(
)
(
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(
)
(
)
Clan
:
Peptidase_MA
(251)
Family
:
Reprolysin
(9)
Homo sapiens (Human)
(9)
1a
Reprolysin-3q2hB01
B:6-215
1b
Reprolysin-3q2hB02
B:6-215
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