PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3Q2H
Biol. Unit 2
Info
Asym.Unit (200 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (98 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
ADAMTS1 IN COMPLEX WITH N-HYDROXYFORMAMIDE INHIBITORS OF ADAM-TS4
Authors
:
S. Gerhardt, D. Hargreaves
Date
:
20 Dec 10 (Deposition) - 30 Mar 11 (Release) - 30 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.33
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Adamts1 Zn-Metalloprotease, Disintegrin, Metalloproteinase, Thrombospondin Motifs, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. De Savi, A. Pape, J. G. Cumming, A. Ting, P. D. Smith, J. N. Burrows, M. Mills, C. Davies, S. Lamont, D. Milne, C. Cook, P. Moore, Y. Sawyer, S. Gerhardt
The Design And Synthesis Of Novel N-Hydroxyformamide Inhibitors Of Adam-Ts4 For The Treatment Of Osteoarthritis
Bioorg. Med. Chem. Lett. V. 21 1376 2011
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
4a: NICKEL (II) ION (NIa)
4b: NICKEL (II) ION (NIb)
4c: NICKEL (II) ION (NIc)
4d: NICKEL (II) ION (NId)
4e: NICKEL (II) ION (NIe)
4f: NICKEL (II) ION (NIf)
4g: NICKEL (II) ION (NIg)
4h: NICKEL (II) ION (NIh)
4i: NICKEL (II) ION (NIi)
4j: NICKEL (II) ION (NIj)
4k: NICKEL (II) ION (NIk)
4l: NICKEL (II) ION (NIl)
4m: NICKEL (II) ION (NIm)
4n: NICKEL (II) ION (NIn)
5a: N-[(2S,4S)-1-({4-[2-(3,5-DIMETHYL-... (QHFa)
5b: N-[(2S,4S)-1-({4-[2-(3,5-DIMETHYL-... (QHFb)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
NA
-1
Ligand/Ion
SODIUM ION
4
NI
-1
Ligand/Ion
NICKEL (II) ION
5
QHF
1
Ligand/Ion
N-[(2S,4S)-1-({4-[2-(3,5-DIMETHYL-1,2-OXAZOL-4-YL)ETHYL]PIPERIDIN-1-YL}SULFONYL)-4-(5-FLUOROPYRIMIDIN-2-YL)-2-METHYLPENTAN-2-YL]-N-HYDROXYFORMAMIDE
6
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC7 (SOFTWARE)
04: BC3 (SOFTWARE)
05: BC5 (SOFTWARE)
06: CC1 (SOFTWARE)
07: CC2 (SOFTWARE)
08: CC3 (SOFTWARE)
09: CC4 (SOFTWARE)
10: CC5 (SOFTWARE)
11: CC6 (SOFTWARE)
12: CC7 (SOFTWARE)
13: CC8 (SOFTWARE)
14: CC9 (SOFTWARE)
15: DC1 (SOFTWARE)
16: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
GLU A:242 , HIS B:61
BINDING SITE FOR RESIDUE NI A 503
02
AC5
SOFTWARE
HIS A:28 , HOH A:334 , ASP B:231
BINDING SITE FOR RESIDUE NI A 504
03
AC7
SOFTWARE
ASP A:231 , HOH A:332 , HIS B:28
BINDING SITE FOR RESIDUE CD A 602
04
BC3
SOFTWARE
GLU A:242 , ASP A:243 , HOH A:365 , HIS B:61
BINDING SITE FOR RESIDUE NI A 612
05
BC5
SOFTWARE
HIS A:273 , LEU B:267
BINDING SITE FOR RESIDUE NI A 615
06
CC1
SOFTWARE
QHF B:2 , HIS B:149 , HIS B:153 , HIS B:159
BINDING SITE FOR RESIDUE ZN B 402
07
CC2
SOFTWARE
HIS A:61 , GLU B:242 , ASP B:243 , HOH B:311
BINDING SITE FOR RESIDUE NI B 604
08
CC3
SOFTWARE
GLU B:9 , ASP B:92 , ASP B:213 , LYS B:214
BINDING SITE FOR RESIDUE CD B 605
09
CC4
SOFTWARE
GLU B:9 , ASP B:92 , ASP B:99 , CYS B:210 , ASP B:213 , HOH B:302
BINDING SITE FOR RESIDUE NI B 606
10
CC5
SOFTWARE
HIS B:187 , ASP B:278 , ASN B:290
BINDING SITE FOR RESIDUE MG B 616
11
CC6
SOFTWARE
HIS B:176 , HOH B:306
BINDING SITE FOR RESIDUE NI B 617
12
CC7
SOFTWARE
ASN B:205 , HIS B:207
BINDING SITE FOR RESIDUE NI B 618
13
CC8
SOFTWARE
HIS B:246
BINDING SITE FOR RESIDUE NI B 619
14
CC9
SOFTWARE
ASP B:108 , LEU B:109 , THR B:117 , GLU B:137 , NA B:704
BINDING SITE FOR RESIDUE NA B 702
15
DC1
SOFTWARE
ASP B:108 , CYS B:115 , NA B:702
BINDING SITE FOR RESIDUE NA B 704
16
DC2
SOFTWARE
THR B:117 , LEU B:118 , GLY B:119 , MET B:120 , ALA B:121 , VAL B:123 , PHE B:145 , THR B:146 , HIS B:149 , GLU B:150 , HIS B:153 , HIS B:159 , LEU B:182 , PHE B:274 , ZN B:402
BINDING SITE FOR RESIDUE QHF B 2
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ADAM_MEPRO (B:6-215)
2: ZINC_PROTEASE (B:146-155)
3: TSP1 (B:298-299|-|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADAM_MEPRO
PS50215
ADAM type metalloprotease domain profile.
ATS1_HUMAN
258-467
1
-
B:6-215
2
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
ATS1_HUMAN
398-407
1
-
B:146-155
3
TSP1
PS50092
Thrombospondin type-1 (TSP1) repeat profile.
ATS1_HUMAN
559-614
908-967
854-905
1
-
B:298-299
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Reprolysin_3q2hB01 (B:6-215)
1b: PFAM_Reprolysin_3q2hB02 (B:6-215)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Peptidase_MA
(251)
Family
:
Reprolysin
(9)
Homo sapiens (Human)
(9)
1a
Reprolysin-3q2hB01
B:6-215
1b
Reprolysin-3q2hB02
B:6-215
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (200 KB)
Header - Asym.Unit
Biol.Unit 1 (98 KB)
Header - Biol.Unit 1
Biol.Unit 2 (98 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3Q2H
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help