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3Q29
Biol. Unit 2
Info
Asym.Unit (261 KB)
Biol.Unit 1 (256 KB)
Biol.Unit 2 (257 KB)
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(1)
Title
:
CYRSTAL STRUCTURE OF HUMAN ALPHA-SYNUCLEIN (1-19) FUSED TO MALTOSE BINDING PROTEIN (MBP)
Authors
:
M. Zhao, M. R. Sawaya, D. Cascio, D. Eisenberg
Date
:
19 Dec 10 (Deposition) - 01 Jun 11 (Release) - 01 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,C
Biol. Unit 1: A,C (1x)
Biol. Unit 2: A,C (1x)
Keywords
:
Fusion Protein, Amyloid, Sugar Binding Protein, Protein Fibril
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Zhao, D. Cascio, M. R. Sawaya, D. Eisenberg
Structures Of Segments Of Alpha-Synuclein Fused To Maltose-Binding Protein Suggest Intermediate States During Amyloid Formation
Protein Sci. V. 20 996 2011
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: MALTOSE (MALa)
2b: MALTOSE (MALb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
MAL
1
Ligand/Ion
MALTOSE
3
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:13 , ASP A:15 , LYS A:16 , TRP A:63 , ALA A:64 , ASP A:66 , ARG A:67 , GLU A:112 , GLU A:154 , PRO A:155 , TYR A:156 , TRP A:341 , HOH A:404
BINDING SITE FOR RESIDUE MAL A 5044
02
AC2
SOFTWARE
ASN A:151 , GLN A:153 , GLU A:154 , ASP A:210 , TYR A:211 , HOH A:443
BINDING SITE FOR RESIDUE SO4 A 391
03
AC3
SOFTWARE
PRO A:41 , ASP A:42 , LYS A:47
BINDING SITE FOR RESIDUE SO4 A 392
04
AC4
SOFTWARE
ASP A:83 , LYS A:84
BINDING SITE FOR RESIDUE SO4 A 393
05
AC5
SOFTWARE
ASN A:186 , ALA A:187 , HOH A:481
BINDING SITE FOR RESIDUE SO4 A 394
06
AC6
SOFTWARE
TYR A:18 , ASN A:19
BINDING SITE FOR RESIDUE SO4 A 395
07
AC7
SOFTWARE
PRO A:335 , GLN A:336 , SER A:338 , ALA A:339 , GLU C:309 , GLU C:310 , HOH C:461
BINDING SITE FOR RESIDUE GOL A 1
08
AC8
SOFTWARE
MET A:149 , ILE A:213 , ALA A:216 , ALA A:217 , LYS A:220 , GLU A:222 , HOH A:455 , HOH A:465 , GLY C:144 , LYS C:145 , HOH C:456
BINDING SITE FOR RESIDUE GOL A 396
09
AC9
SOFTWARE
ASP C:15 , LYS C:16 , TRP C:63 , ALA C:64 , ASP C:66 , ARG C:67 , GLU C:112 , GLU C:154 , PRO C:155 , TYR C:156 , PHE C:157 , TRP C:341 , HOH C:429 , HOH C:449
BINDING SITE FOR RESIDUE MAL C 5044
10
BC1
SOFTWARE
ASN C:151 , GLN C:153 , ASP C:210 , TYR C:211 , HOH C:444
BINDING SITE FOR RESIDUE SO4 C 1
11
BC2
SOFTWARE
PRO C:41 , ASP C:42
BINDING SITE FOR RESIDUE SO4 C 391
12
BC3
SOFTWARE
TYR C:18 , ASN C:19
BINDING SITE FOR RESIDUE SO4 C 392
13
BC4
SOFTWARE
ASP C:83 , LYS C:84
BINDING SITE FOR RESIDUE SO4 C 393
14
BC5
SOFTWARE
ARG A:345 , LYS C:314
BINDING SITE FOR RESIDUE SO4 C 394
15
BC6
SOFTWARE
LYS A:203 , LYS C:138
BINDING SITE FOR RESIDUE SO4 C 395
16
BC7
SOFTWARE
GLN A:356 , GLU A:360 , LYS C:120 , GLY C:244 , VAL C:245 , HOH C:437
BINDING SITE FOR RESIDUE GOL C 396
17
BC8
SOFTWARE
THR A:367 , HOH A:426 , GLN C:326
BINDING SITE FOR RESIDUE GOL C 397
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SBP_BACTERIAL_1 (A:108-125,C:108-125)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SBP_BACTERIAL_1
PS01037
Bacterial extracellular solute-binding proteins, family 1 signature.
MALE_ECOLI
133-150
2
A:108-125
C:108-125
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3q29a_ (A:)
1b: SCOP_d3q29c_ (C:)
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Classes
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
automated matches
(76)
Escherichia coli [TaxId: 562]
(6)
1a
d3q29a_
A:
1b
d3q29c_
C:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_SBP_bac_1_3q29C01 (C:12-292)
1b: PFAM_SBP_bac_1_3q29C02 (C:12-292)
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Clan
:
PBP
(391)
Family
:
SBP_bac_1
(83)
Escherichia coli (strain K12)
(29)
1a
SBP_bac_1-3q29C01
C:12-292
1b
SBP_bac_1-3q29C02
C:12-292
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (261 KB)
Header - Asym.Unit
Biol.Unit 1 (256 KB)
Header - Biol.Unit 1
Biol.Unit 2 (257 KB)
Header - Biol.Unit 2
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