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3Q29
Asym. Unit
Info
Asym.Unit (261 KB)
Biol.Unit 1 (256 KB)
Biol.Unit 2 (257 KB)
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(1)
Title
:
CYRSTAL STRUCTURE OF HUMAN ALPHA-SYNUCLEIN (1-19) FUSED TO MALTOSE BINDING PROTEIN (MBP)
Authors
:
M. Zhao, M. R. Sawaya, D. Cascio, D. Eisenberg
Date
:
19 Dec 10 (Deposition) - 01 Jun 11 (Release) - 01 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,C
Biol. Unit 1: A,C (1x)
Biol. Unit 2: A,C (1x)
Keywords
:
Fusion Protein, Amyloid, Sugar Binding Protein, Protein Fibril
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Zhao, D. Cascio, M. R. Sawaya, D. Eisenberg
Structures Of Segments Of Alpha-Synuclein Fused To Maltose-Binding Protein Suggest Intermediate States During Amyloid Formation
Protein Sci. V. 20 996 2011
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: MALTOSE (MALa)
2b: MALTOSE (MALb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
MAL
2
Ligand/Ion
MALTOSE
3
SO4
11
Ligand/Ion
SULFATE ION
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:13 , ASP A:15 , LYS A:16 , TRP A:63 , ALA A:64 , ASP A:66 , ARG A:67 , GLU A:112 , GLU A:154 , PRO A:155 , TYR A:156 , TRP A:341 , HOH A:404
BINDING SITE FOR RESIDUE MAL A 5044
02
AC2
SOFTWARE
ASN A:151 , GLN A:153 , GLU A:154 , ASP A:210 , TYR A:211 , HOH A:443
BINDING SITE FOR RESIDUE SO4 A 391
03
AC3
SOFTWARE
PRO A:41 , ASP A:42 , LYS A:47
BINDING SITE FOR RESIDUE SO4 A 392
04
AC4
SOFTWARE
ASP A:83 , LYS A:84
BINDING SITE FOR RESIDUE SO4 A 393
05
AC5
SOFTWARE
ASN A:186 , ALA A:187 , HOH A:481
BINDING SITE FOR RESIDUE SO4 A 394
06
AC6
SOFTWARE
TYR A:18 , ASN A:19
BINDING SITE FOR RESIDUE SO4 A 395
07
AC7
SOFTWARE
PRO A:335 , GLN A:336 , SER A:338 , ALA A:339 , GLU C:309 , GLU C:310 , HOH C:461
BINDING SITE FOR RESIDUE GOL A 1
08
AC8
SOFTWARE
MET A:149 , ILE A:213 , ALA A:216 , ALA A:217 , LYS A:220 , GLU A:222 , HOH A:455 , HOH A:465 , GLY C:144 , LYS C:145 , HOH C:456
BINDING SITE FOR RESIDUE GOL A 396
09
AC9
SOFTWARE
ASP C:15 , LYS C:16 , TRP C:63 , ALA C:64 , ASP C:66 , ARG C:67 , GLU C:112 , GLU C:154 , PRO C:155 , TYR C:156 , PHE C:157 , TRP C:341 , HOH C:429 , HOH C:449
BINDING SITE FOR RESIDUE MAL C 5044
10
BC1
SOFTWARE
ASN C:151 , GLN C:153 , ASP C:210 , TYR C:211 , HOH C:444
BINDING SITE FOR RESIDUE SO4 C 1
11
BC2
SOFTWARE
PRO C:41 , ASP C:42
BINDING SITE FOR RESIDUE SO4 C 391
12
BC3
SOFTWARE
TYR C:18 , ASN C:19
BINDING SITE FOR RESIDUE SO4 C 392
13
BC4
SOFTWARE
ASP C:83 , LYS C:84
BINDING SITE FOR RESIDUE SO4 C 393
14
BC5
SOFTWARE
ARG A:345 , LYS C:314
BINDING SITE FOR RESIDUE SO4 C 394
15
BC6
SOFTWARE
LYS A:203 , LYS C:138
BINDING SITE FOR RESIDUE SO4 C 395
16
BC7
SOFTWARE
GLN A:356 , GLU A:360 , LYS C:120 , GLY C:244 , VAL C:245 , HOH C:437
BINDING SITE FOR RESIDUE GOL C 396
17
BC8
SOFTWARE
THR A:367 , HOH A:426 , GLN C:326
BINDING SITE FOR RESIDUE GOL C 397
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SBP_BACTERIAL_1 (A:108-125,C:108-125)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SBP_BACTERIAL_1
PS01037
Bacterial extracellular solute-binding proteins, family 1 signature.
MALE_ECOLI
133-150
2
A:108-125
C:108-125
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3q29a_ (A:)
1b: SCOP_d3q29c_ (C:)
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Classes
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
automated matches
(76)
Escherichia coli [TaxId: 562]
(6)
1a
d3q29a_
A:
1b
d3q29c_
C:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_SBP_bac_1_3q29C01 (C:12-292)
1b: PFAM_SBP_bac_1_3q29C02 (C:12-292)
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Clans
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Clan
:
PBP
(391)
Family
:
SBP_bac_1
(83)
Escherichia coli (strain K12)
(29)
1a
SBP_bac_1-3q29C01
C:12-292
1b
SBP_bac_1-3q29C02
C:12-292
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (261 KB)
Header - Asym.Unit
Biol.Unit 1 (256 KB)
Header - Biol.Unit 1
Biol.Unit 2 (257 KB)
Header - Biol.Unit 2
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