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3Q25
Biol. Unit 1
Info
Asym.Unit (146 KB)
Biol.Unit 1 (140 KB)
Biol.Unit 2 (278 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN ALPHA-SYNUCLEIN (1-19) FUSED TO MALTOSE BINDING PROTEIN (MBP)
Authors
:
M. Zhao, M. R. Sawaya, D. Cascio, D. Eisenberg
Date
:
19 Dec 10 (Deposition) - 01 Jun 11 (Release) - 01 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Fusion Protein, Amyloid, Sugar Binding Protein, Protein Fibril
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Zhao, D. Cascio, M. R. Sawaya, D. Eisenberg
Structures Of Segments Of Alpha-Synuclein Fused To Maltose-Binding Protein Suggest Intermediate States During Amyloid Formation
Protein Sci. V. 20 996 2011
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
2a: MALTOSE (MALa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
6
Ligand/Ion
GLYCEROL
2
MAL
1
Ligand/Ion
MALTOSE
3
SO4
10
Ligand/Ion
SULFATE ION
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:13 , ASP A:15 , LYS A:16 , TRP A:63 , ALA A:64 , ASP A:66 , ARG A:67 , GLU A:112 , GLU A:154 , PRO A:155 , TYR A:156 , TRP A:341 , HOH A:409 , HOH A:468 , HOH A:493 , HOH A:502 , HOH A:566
BINDING SITE FOR RESIDUE MAL A 5044
02
AC2
SOFTWARE
ASN A:151 , GLU A:154 , ASP A:210 , TYR A:211 , HOH A:466 , HOH A:538
BINDING SITE FOR RESIDUE SO4 A 1
03
AC3
SOFTWARE
PRO A:41 , ASP A:42 , LYS A:47 , HOH A:471
BINDING SITE FOR RESIDUE SO4 A 2
04
AC4
SOFTWARE
ASN A:186 , ALA A:187 , HOH A:474 , HOH A:536
BINDING SITE FOR RESIDUE SO4 A 391
05
AC5
SOFTWARE
ASP A:83 , LYS A:84 , HOH A:460
BINDING SITE FOR RESIDUE SO4 A 392
06
AC6
SOFTWARE
THR A:54 , GLY A:55
BINDING SITE FOR RESIDUE SO4 A 393
07
AC7
SOFTWARE
GLY A:14 , HIS A:40 , ASP A:42 , HOH A:426 , HOH A:471 , HOH A:572 , HOH A:673
BINDING SITE FOR RESIDUE SO4 A 394
08
AC8
SOFTWARE
TYR A:18 , ASN A:19
BINDING SITE FOR RESIDUE SO4 A 395
09
AC9
SOFTWARE
LYS A:27 , ASN A:283 , TYR A:284 , HOH A:604
BINDING SITE FOR RESIDUE SO4 A 396
10
BC1
SOFTWARE
TYR A:118 , THR A:246 , HOH A:600 , HOH A:643
BINDING SITE FOR RESIDUE SO4 A 397
11
BC2
SOFTWARE
THR A:54 , GLY A:57 , PRO A:58 , ASP A:59 , ASN A:268 , ALA A:270 , PRO A:272 , LYS A:383 , HOH A:476 , HOH A:649
BINDING SITE FOR RESIDUE SO4 A 398
12
BC3
SOFTWARE
TYR A:168 , ALA A:169 , PHE A:170 , PHE A:259 , PRO A:332 , ALA A:389 , HOH A:453 , HOH A:494
BINDING SITE FOR RESIDUE GOL A 399
13
BC4
SOFTWARE
LYS A:171 , TYR A:172 , GLU A:173 , LYS A:176 , ASP A:178 , HOH A:500 , HOH A:583 , HOH A:653
BINDING SITE FOR RESIDUE GOL A 400
14
BC5
SOFTWARE
ASN A:13 , ASP A:42 , LYS A:43 , HOH A:426 , HOH A:502 , HOH A:572 , HOH A:574
BINDING SITE FOR RESIDUE GOL A 401
15
BC6
SOFTWARE
ASN A:295 , LYS A:296 , PRO A:299 , ARG A:317 , ARG A:355 , HOH A:446 , HOH A:448 , HOH A:589
BINDING SITE FOR RESIDUE GOL A 402
16
BC7
SOFTWARE
ARG A:99 , TYR A:100 , ASN A:101 , GLY A:102 , HOH A:488 , HOH A:529
BINDING SITE FOR RESIDUE GOL A 403
17
BC8
SOFTWARE
ALA A:72 , GLY A:75 , LEU A:76 , LEU A:77 , GLU A:79 , ILE A:105 , ASP A:373 , HOH A:549
BINDING SITE FOR RESIDUE GOL A 404
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SBP_BACTERIAL_1 (A:108-125)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SBP_BACTERIAL_1
PS01037
Bacterial extracellular solute-binding proteins, family 1 signature.
MALE_ECOLI
133-150
1
A:108-125
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3q25a_ (A:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
automated matches
(76)
Escherichia coli [TaxId: 562]
(6)
1a
d3q25a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SBP_bac_1_3q25A01 (A:12-292)
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Clan
:
PBP
(391)
Family
:
SBP_bac_1
(83)
Escherichia coli (strain K12)
(29)
1a
SBP_bac_1-3q25A01
A:12-292
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (146 KB)
Header - Asym.Unit
Biol.Unit 1 (140 KB)
Header - Biol.Unit 1
Biol.Unit 2 (278 KB)
Header - Biol.Unit 2
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