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3Q16
Asym. Unit
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Asym.Unit (557 KB)
Biol.Unit 1, α-C (1.1 MB)
Biol.Unit 1 (1.1 MB)
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(1)
Title
:
LINKAGE BETWEEN THE BACTERIAL ACID STRESS AND STRINGENT RESPONSES: THE STRUCTURE OF THE INDUCIBLE LYSINE DECARBOXYLASE
Authors
:
M. El Bakkouri, E. F. Pai, W. A. Houry
Date
:
16 Dec 10 (Deposition) - 16 Feb 11 (Release) - 30 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.10
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (2x)
Keywords
:
Aspartate Aminotranferase, Chey, Plp, Pyridoxal-5-Phosphate, Inducible Lysine Decarboxylase, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
U. Kanjee, I. Gutsche, E. Alexopoulos, B. Zhao, M. El Bakkouri, G. Thibault, K. Liu, S. Ramachandran, J. Snider, E. F. Pai, W. A. Houry
Linkage Between The Bacterial Acid Stress And Stringent Responses: The Structure Of The Inducible Lysine Decarboxylase.
Embo J. V. 30 931 2011
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPa)
1b: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPb)
1c: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPc)
1d: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPd)
1e: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPe)
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No.
Name
Count
Type
Full Name
1
LLP
5
Mod. Amino Acid
2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 5)
Info
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1: OKR_DC_1 (A:362-376,B:362-376,C:362-376,D:36...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
OKR_DC_1
PS00703
Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site.
LDCI_ECOLI
362-376
5
A:362-376
B:362-376
C:362-376
D:362-376
E:362-376
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Exons
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SCOP Domains
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Pfam Domains
(3, 15)
Info
all PFAM domains
1a: PFAM_OKR_DC_1_N_3q16E01 (E:14-124)
1b: PFAM_OKR_DC_1_N_3q16E02 (E:14-124)
1c: PFAM_OKR_DC_1_N_3q16E03 (E:14-124)
1d: PFAM_OKR_DC_1_N_3q16E04 (E:14-124)
1e: PFAM_OKR_DC_1_N_3q16E05 (E:14-124)
2a: PFAM_OKR_DC_1_3q16E06 (E:130-545)
2b: PFAM_OKR_DC_1_3q16E07 (E:130-545)
2c: PFAM_OKR_DC_1_3q16E08 (E:130-545)
2d: PFAM_OKR_DC_1_3q16E09 (E:130-545)
2e: PFAM_OKR_DC_1_3q16E10 (E:130-545)
3a: PFAM_OKR_DC_1_C_3q16E11 (E:570-704)
3b: PFAM_OKR_DC_1_C_3q16E12 (E:570-704)
3c: PFAM_OKR_DC_1_C_3q16E13 (E:570-704)
3d: PFAM_OKR_DC_1_C_3q16E14 (E:570-704)
3e: PFAM_OKR_DC_1_C_3q16E15 (E:570-704)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
CheY
(97)
Family
:
OKR_DC_1_N
(3)
Escherichia coli (strain K12)
(2)
1a
OKR_DC_1_N-3q16E01
E:14-124
1b
OKR_DC_1_N-3q16E02
E:14-124
1c
OKR_DC_1_N-3q16E03
E:14-124
1d
OKR_DC_1_N-3q16E04
E:14-124
1e
OKR_DC_1_N-3q16E05
E:14-124
Clan
:
PLP_aminotran
(240)
Family
:
OKR_DC_1
(3)
Escherichia coli (strain K12)
(2)
2a
OKR_DC_1-3q16E06
E:130-545
2b
OKR_DC_1-3q16E07
E:130-545
2c
OKR_DC_1-3q16E08
E:130-545
2d
OKR_DC_1-3q16E09
E:130-545
2e
OKR_DC_1-3q16E10
E:130-545
Clan
:
no clan defined [family: OKR_DC_1_C]
(3)
Family
:
OKR_DC_1_C
(3)
Escherichia coli (strain K12)
(2)
3a
OKR_DC_1_C-3q16E11
E:570-704
3b
OKR_DC_1_C-3q16E12
E:570-704
3c
OKR_DC_1_C-3q16E13
E:570-704
3d
OKR_DC_1_C-3q16E14
E:570-704
3e
OKR_DC_1_C-3q16E15
E:570-704
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Asym.Unit (557 KB)
Header - Asym.Unit
Biol.Unit 1 (1.1 MB)
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