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3Q0E
Asym. Unit
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Asym.Unit (246 KB)
Biol.Unit 1 (241 KB)
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(1)
Title
:
CRYSTALS STRUCTURE OF ASPARTATE BETA-SEMIALDEHYDE DEHYDROGENASE FROM VIBRIO CHOLERAE WITH PRODUCT OF S-ALLYL-L-CYSTEINE SULFOXIDE
Authors
:
A. G. Pavlovsky, X. Liu, R. E. Viola
Date
:
15 Dec 10 (Deposition) - 22 Feb 12 (Release) - 08 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxydoreductase, Nadp, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. G. Pavlovsky, X. Liu, C. R. Faehnle, N. Potente, R. E. Viola
Structural Characterization Of Inhibitors With Selectivity Against Members Of A Homologous Enzyme Family.
Chem. Biol. Drug Des. V. 79 128 2012
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CYSTEINE (CYSa)
2b: CYSTEINE (CYSb)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
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No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CYS
2
Mod. Amino Acid
CYSTEINE
3
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
4
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:101 , ASN A:133 , CYS A:134 , GLU A:240 , LYS A:243 , GLN A:350 , HOH A:809
BINDING SITE FOR RESIDUE CYS A 401
2
AC2
SOFTWARE
ARG A:9 , SER A:35 , THR A:36 , SER A:37 , HOH A:531 , HOH A:546
BINDING SITE FOR RESIDUE SO4 A 402
3
AC3
SOFTWARE
ARG A:309 , HOH A:504 , HOH A:735 , LYS B:232
BINDING SITE FOR RESIDUE ACT A 403
4
AC4
SOFTWARE
ARG B:9 , SER B:35 , THR B:36 , SER B:37 , HOH B:548 , HOH B:787
BINDING SITE FOR RESIDUE SO4 B 401
5
AC5
SOFTWARE
ARG B:101 , ASN B:133 , CYS B:134 , GLU B:240 , GLN B:350 , HOH B:632 , HOH B:706
BINDING SITE FOR RESIDUE CYS B 402
6
AC6
SOFTWARE
ARG B:19 , GLU B:22 , GLY B:323
BINDING SITE FOR RESIDUE EDO B 403
7
AC7
SOFTWARE
GLY B:10 , MET B:11 , GLY B:167 , ALA B:168 , HOH B:749 , HOH B:781
BINDING SITE FOR RESIDUE EDO B 404
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ASD (A:261-275,B:261-275)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASD
PS01103
Aspartate-semialdehyde dehydrogenase signature.
DHAS1_VIBCH
261-275
2
A:261-275
B:261-275
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Exons
(0, 0)
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3q0ea2 (A:133-354)
1b: SCOP_d3q0eb2 (B:133-354)
2a: SCOP_d3q0ea1 (A:1-132,A:355-369)
2b: SCOP_d3q0eb1 (B:1-132,B:355-369)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
GAPDH-like
(99)
Protein domain
:
Aspartate beta-semialdehyde dehydrogenase
(31)
Vibrio cholerae [TaxId: 666]
(4)
1a
d3q0ea2
A:133-354
1b
d3q0eb2
B:133-354
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
Aspartate beta-semialdehyde dehydrogenase
(31)
Vibrio cholerae [TaxId: 666]
(4)
2a
d3q0ea1
A:1-132,A:355-369
2b
d3q0eb1
B:1-132,B:355-369
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (246 KB)
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Header - Biol.Unit 1
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