PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3Q08
Asym. Unit
Info
Asym.Unit (1.6 MB)
Biol.Unit 1 (416 KB)
Biol.Unit 2 (424 KB)
Biol.Unit 3 (422 KB)
Biol.Unit 4 (427 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF CHLORITE DISMUTASE FROM D. AROMATICA AT PH 6.5
Authors
:
B. R. Goblirsch, C. M. Wilmot
Date
:
15 Dec 10 (Deposition) - 05 Jan 11 (Release) - 05 Jan 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.05
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Biol. Unit 3: K,L,M,N,O (1x)
Biol. Unit 4: P,Q,R,S,T (1x)
Keywords
:
Ferrodoxin Fold, Chlorite Decomposition, O2 Generation, Periplasim, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. R. Goblirsch, B. R. Streit, J. L. Dubois, C. M. Wilmot
Structural Features Promoting Dioxygen Production By Dechloromonas Aromatica Chlorite Dismutase.
J. Biol. Inorg. Chem. V. 15 879 2010
[
close entry info
]
Hetero Components
(4, 80)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
1q: CALCIUM ION (CAq)
1r: CALCIUM ION (CAr)
1s: CALCIUM ION (CAs)
1t: CALCIUM ION (CAt)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
2f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
2g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
2h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
2i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
2j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
2k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
2l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
2m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
2n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
2o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
2p: PROTOPORPHYRIN IX CONTAINING FE (HEMp)
2q: PROTOPORPHYRIN IX CONTAINING FE (HEMq)
2r: PROTOPORPHYRIN IX CONTAINING FE (HEMr)
2s: PROTOPORPHYRIN IX CONTAINING FE (HEMs)
2t: PROTOPORPHYRIN IX CONTAINING FE (HEMt)
3a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
3c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
3d: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESd)
3e: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESe)
3f: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESf)
3g: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESg)
3h: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESh)
3i: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESi)
3j: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESj)
3k: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESk)
3l: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESl)
3m: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESm)
3n: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESn)
3o: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESo)
3p: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESp)
3q: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESq)
3r: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESr)
3s: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESs)
3t: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESt)
4a: NITRITE ION (NO2a)
4b: NITRITE ION (NO2b)
4c: NITRITE ION (NO2c)
4d: NITRITE ION (NO2d)
4e: NITRITE ION (NO2e)
4f: NITRITE ION (NO2f)
4g: NITRITE ION (NO2g)
4h: NITRITE ION (NO2h)
4i: NITRITE ION (NO2i)
4j: NITRITE ION (NO2j)
4k: NITRITE ION (NO2k)
4l: NITRITE ION (NO2l)
4m: NITRITE ION (NO2m)
4n: NITRITE ION (NO2n)
4o: NITRITE ION (NO2o)
4p: NITRITE ION (NO2p)
4q: NITRITE ION (NO2q)
4r: NITRITE ION (NO2r)
4s: NITRITE ION (NO2s)
4t: NITRITE ION (NO2t)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
20
Ligand/Ion
CALCIUM ION
2
HEM
20
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
MES
20
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4
NO2
20
Ligand/Ion
NITRITE ION
[
close Hetero Component info
]
Sites
(80, 80)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
73: IC1 (SOFTWARE)
74: IC2 (SOFTWARE)
75: IC3 (SOFTWARE)
76: IC4 (SOFTWARE)
77: IC5 (SOFTWARE)
78: IC6 (SOFTWARE)
79: IC7 (SOFTWARE)
80: IC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:116 , ASN A:117 , TYR A:118 , ILE A:119 , ILE A:147 , LYS A:151 , MET A:167 , HIS A:170 , THR A:171 , THR A:174 , TYR A:177 , LEU A:178 , ARG A:183 , PHE A:196 , THR A:198 , PHE A:200 , LEU A:211 , MET A:212 , LEU A:215 , NO2 A:2000
BINDING SITE FOR RESIDUE HEM A 1000
02
AC2
SOFTWARE
ASP A:192 , GLU E:70 , THR E:231
BINDING SITE FOR RESIDUE CA E 1001
03
AC3
SOFTWARE
ARG A:183 , LYS A:184 , LEU A:185 , HEM A:1000
BINDING SITE FOR RESIDUE NO2 A 2000
04
AC4
SOFTWARE
THR A:16 , GLN A:17 , PRO A:18 , THR A:113 , LYS A:114 , LEU A:131 , ARG A:183 , LYS A:184
BINDING SITE FOR RESIDUE MES A 2001
05
AC5
SOFTWARE
LEU B:116 , ASN B:117 , TYR B:118 , ILE B:119 , LYS B:151 , TRP B:155 , MET B:167 , HIS B:170 , THR B:171 , THR B:174 , ARG B:183 , PHE B:196 , THR B:198 , PHE B:200 , LEU B:211 , MET B:212 , LEU B:215 , NO2 B:2000
BINDING SITE FOR RESIDUE HEM B 1000
06
AC6
SOFTWARE
ASP B:192 , GLU D:70 , THR D:231
BINDING SITE FOR RESIDUE CA D 1001
07
AC7
SOFTWARE
ARG B:183 , LYS B:184 , LEU B:185 , HEM B:1000
BINDING SITE FOR RESIDUE NO2 B 2000
08
AC8
SOFTWARE
THR B:16 , PRO B:18 , THR B:113 , LYS B:114 , ARG B:183 , LYS B:184
BINDING SITE FOR RESIDUE MES B 2001
09
AC9
SOFTWARE
LEU C:116 , ASN C:117 , TYR C:118 , ILE C:119 , LYS C:151 , MET C:167 , HIS C:170 , THR C:171 , THR C:174 , ARG C:183 , PHE C:196 , THR C:198 , PHE C:200 , LEU C:211 , LEU C:215 , NO2 C:2000
BINDING SITE FOR RESIDUE HEM C 1000
10
BC1
SOFTWARE
GLU B:70 , THR B:231 , ASP C:192
BINDING SITE FOR RESIDUE CA B 1001
11
BC2
SOFTWARE
ARG C:183 , THR C:198 , HEM C:1000
BINDING SITE FOR RESIDUE NO2 C 2000
12
BC3
SOFTWARE
THR C:16 , GLN C:17 , PRO C:18 , THR C:113 , LYS C:114 , LEU C:131 , ARG C:183 , LYS C:184
BINDING SITE FOR RESIDUE MES C 2001
13
BC4
SOFTWARE
LEU D:116 , ASN D:117 , TYR D:118 , ILE D:119 , LYS D:151 , MET D:167 , HIS D:170 , THR D:171 , THR D:174 , TYR D:177 , LEU D:178 , ARG D:183 , PHE D:196 , THR D:198 , PHE D:200 , LEU D:211 , MET D:212 , LEU D:215 , NO2 D:2000
BINDING SITE FOR RESIDUE HEM D 1000
14
BC5
SOFTWARE
GLU A:70 , THR A:231 , ASP D:192
BINDING SITE FOR RESIDUE CA A 1001
15
BC6
SOFTWARE
ARG D:183 , LEU D:185 , HEM D:1000
BINDING SITE FOR RESIDUE NO2 D 2000
16
BC7
SOFTWARE
THR D:16 , GLN D:17 , PRO D:18 , THR D:113 , LYS D:114 , LEU D:131 , ARG D:183
BINDING SITE FOR RESIDUE MES D 2001
17
BC8
SOFTWARE
LEU E:116 , ASN E:117 , TYR E:118 , ILE E:119 , LEU E:131 , LYS E:151 , MET E:167 , HIS E:170 , THR E:171 , THR E:174 , TYR E:177 , ARG E:183 , PHE E:196 , THR E:198 , PHE E:200 , LEU E:211 , LEU E:215 , NO2 E:2000
BINDING SITE FOR RESIDUE HEM E 1000
18
BC9
SOFTWARE
GLU C:70 , THR C:231 , ASP E:192
BINDING SITE FOR RESIDUE CA C 1001
19
CC1
SOFTWARE
ARG E:183 , HEM E:1000
BINDING SITE FOR RESIDUE NO2 E 2000
20
CC2
SOFTWARE
THR E:16 , GLN E:17 , PRO E:18 , THR E:113 , LYS E:114 , LEU E:116 , LEU E:131 , ARG E:183 , LYS E:184
BINDING SITE FOR RESIDUE MES E 2001
21
CC3
SOFTWARE
LEU F:116 , ASN F:117 , TYR F:118 , ILE F:119 , LYS F:151 , MET F:167 , HIS F:170 , THR F:171 , THR F:174 , TYR F:177 , LEU F:178 , ARG F:183 , LEU F:185 , PHE F:196 , THR F:198 , PHE F:200 , LEU F:211 , MET F:212 , LEU F:215 , NO2 F:2000
BINDING SITE FOR RESIDUE HEM F 1000
22
CC4
SOFTWARE
ASP F:192 , GLU J:70 , THR J:231
BINDING SITE FOR RESIDUE CA J 1001
23
CC5
SOFTWARE
ARG F:183 , LYS F:184 , LEU F:185 , HEM F:1000
BINDING SITE FOR RESIDUE NO2 F 2000
24
CC6
SOFTWARE
PRO F:18 , THR F:113 , LYS F:114 , LEU F:131 , ARG F:183
BINDING SITE FOR RESIDUE MES F 2001
25
CC7
SOFTWARE
LEU G:116 , ASN G:117 , TYR G:118 , ILE G:119 , VAL G:149 , LYS G:151 , MET G:167 , HIS G:170 , THR G:171 , THR G:174 , TYR G:177 , LEU G:178 , ARG G:183 , LEU G:185 , PHE G:196 , THR G:198 , PHE G:200 , LEU G:211 , MET G:212 , LEU G:215 , NO2 G:2000
BINDING SITE FOR RESIDUE HEM G 1000
26
CC8
SOFTWARE
GLU F:70 , THR F:231 , ASP G:192
BINDING SITE FOR RESIDUE CA F 1001
27
CC9
SOFTWARE
ARG G:183 , LYS G:184 , LEU G:185 , HEM G:1000
BINDING SITE FOR RESIDUE NO2 G 2000
28
DC1
SOFTWARE
THR G:16 , GLN G:17 , PRO G:18 , THR G:113 , LYS G:114 , LEU G:116 , ARG G:183
BINDING SITE FOR RESIDUE MES G 2001
29
DC2
SOFTWARE
LEU H:116 , ASN H:117 , TYR H:118 , ILE H:119 , VAL H:149 , LYS H:151 , MET H:167 , HIS H:170 , THR H:171 , THR H:174 , LEU H:178 , ARG H:183 , PHE H:196 , THR H:198 , PHE H:200 , LEU H:211 , LEU H:215 , NO2 H:2000
BINDING SITE FOR RESIDUE HEM H 1000
30
DC3
SOFTWARE
GLU G:70 , THR G:231 , ASP H:192
BINDING SITE FOR RESIDUE CA G 1001
31
DC4
SOFTWARE
ARG H:183 , LEU H:185 , THR H:198 , HEM H:1000
BINDING SITE FOR RESIDUE NO2 H 2000
32
DC5
SOFTWARE
THR H:16 , GLN H:17 , PRO H:18 , THR H:113 , ARG H:183
BINDING SITE FOR RESIDUE MES H 2001
33
DC6
SOFTWARE
LEU I:116 , ASN I:117 , TYR I:118 , ILE I:119 , VAL I:149 , LYS I:151 , MET I:167 , HIS I:170 , THR I:171 , THR I:174 , TYR I:177 , ARG I:183 , PHE I:196 , THR I:198 , PHE I:200 , LEU I:211 , LEU I:215 , NO2 I:2000
BINDING SITE FOR RESIDUE HEM I 1000
34
DC7
SOFTWARE
GLU H:70 , THR H:231 , ASP I:192
BINDING SITE FOR RESIDUE CA H 1001
35
DC8
SOFTWARE
ARG I:183 , HEM I:1000
BINDING SITE FOR RESIDUE NO2 I 2000
36
DC9
SOFTWARE
THR I:16 , GLN I:17 , PRO I:18 , THR I:113 , LYS I:114 , LEU I:116 , LEU I:131 , ARG I:183 , LYS I:184
BINDING SITE FOR RESIDUE MES I 2001
37
EC1
SOFTWARE
LEU J:116 , ASN J:117 , TYR J:118 , ILE J:119 , VAL J:149 , LYS J:151 , MET J:167 , HIS J:170 , THR J:171 , THR J:174 , TYR J:177 , ARG J:183 , PHE J:196 , THR J:198 , PHE J:200 , LEU J:211 , MET J:212 , LEU J:215 , NO2 J:2000
BINDING SITE FOR RESIDUE HEM J 1000
38
EC2
SOFTWARE
GLU I:70 , THR I:231 , ASP J:192
BINDING SITE FOR RESIDUE CA I 1001
39
EC3
SOFTWARE
ARG J:183 , LYS J:184 , HEM J:1000
BINDING SITE FOR RESIDUE NO2 J 2000
40
EC4
SOFTWARE
THR J:16 , GLN J:17 , PRO J:18 , THR J:113 , LYS J:114 , ARG J:183 , LYS J:184
BINDING SITE FOR RESIDUE MES J 2001
41
EC5
SOFTWARE
LEU K:116 , ASN K:117 , TYR K:118 , ILE K:119 , VAL K:149 , LYS K:151 , MET K:167 , HIS K:170 , THR K:171 , THR K:174 , ARG K:183 , PHE K:196 , THR K:198 , PHE K:200 , LEU K:211 , MET K:212 , LEU K:215 , NO2 K:2000
BINDING SITE FOR RESIDUE HEM K 1000
42
EC6
SOFTWARE
ASP K:192 , GLU O:70 , THR O:231
BINDING SITE FOR RESIDUE CA O 1001
43
EC7
SOFTWARE
ARG K:183 , HEM K:1000
BINDING SITE FOR RESIDUE NO2 K 2000
44
EC8
SOFTWARE
THR K:16 , GLN K:17 , PRO K:18 , THR K:113 , LYS K:114 , LEU K:131 , ARG K:183
BINDING SITE FOR RESIDUE MES K 2001
45
EC9
SOFTWARE
LEU L:116 , ASN L:117 , TYR L:118 , ILE L:119 , LEU L:131 , LYS L:151 , MET L:167 , HIS L:170 , THR L:171 , THR L:174 , LEU L:178 , ARG L:183 , PHE L:196 , THR L:198 , PHE L:200 , LEU L:211 , LEU L:215 , NO2 L:2000
BINDING SITE FOR RESIDUE HEM L 1000
46
FC1
SOFTWARE
GLU K:70 , THR K:231 , ASP L:192
BINDING SITE FOR RESIDUE CA K 1001
47
FC2
SOFTWARE
ARG L:183 , LEU L:185 , HEM L:1000
BINDING SITE FOR RESIDUE NO2 L 2000
48
FC3
SOFTWARE
GLN L:17 , PRO L:18 , THR L:113 , LYS L:114 , ARG L:183
BINDING SITE FOR RESIDUE MES L 2001
49
FC4
SOFTWARE
LEU M:116 , ASN M:117 , TYR M:118 , ILE M:119 , VAL M:149 , LYS M:151 , TRP M:155 , MET M:167 , HIS M:170 , THR M:171 , THR M:174 , ARG M:183 , PHE M:196 , THR M:198 , PHE M:200 , LEU M:211 , MET M:212 , LEU M:215 , NO2 M:2000
BINDING SITE FOR RESIDUE HEM M 1000
50
FC5
SOFTWARE
GLU L:70 , THR L:231 , ASP M:192
BINDING SITE FOR RESIDUE CA L 1001
51
FC6
SOFTWARE
ARG M:183 , LEU M:185 , HEM M:1000
BINDING SITE FOR RESIDUE NO2 M 2000
52
FC7
SOFTWARE
THR M:16 , GLN M:17 , PRO M:18 , THR M:113 , LYS M:114 , ARG M:183
BINDING SITE FOR RESIDUE MES M 2001
53
FC8
SOFTWARE
LEU N:116 , ASN N:117 , TYR N:118 , ILE N:119 , LYS N:151 , MET N:167 , HIS N:170 , THR N:171 , THR N:174 , LEU N:178 , ARG N:183 , PHE N:196 , THR N:198 , PHE N:200 , LEU N:211 , LEU N:215 , NO2 N:2000
BINDING SITE FOR RESIDUE HEM N 1000
54
FC9
SOFTWARE
GLU M:70 , THR M:231 , ASP N:192
BINDING SITE FOR RESIDUE CA M 1001
55
GC1
SOFTWARE
ARG N:183 , LYS N:184 , HEM N:1000
BINDING SITE FOR RESIDUE NO2 N 2000
56
GC2
SOFTWARE
THR N:16 , GLN N:17 , PRO N:18 , THR N:113 , LYS N:114 , LEU N:131 , ARG N:183
BINDING SITE FOR RESIDUE MES N 2001
57
GC3
SOFTWARE
LEU O:116 , ASN O:117 , TYR O:118 , ILE O:119 , LYS O:151 , MET O:167 , HIS O:170 , THR O:171 , THR O:174 , LEU O:178 , ARG O:183 , PHE O:196 , THR O:198 , PHE O:200 , LEU O:211 , MET O:212 , LEU O:215 , NO2 O:2000 , HOH O:3000
BINDING SITE FOR RESIDUE HEM O 1000
58
GC4
SOFTWARE
GLU N:70 , THR N:231 , ASP O:192
BINDING SITE FOR RESIDUE CA N 1001
59
GC5
SOFTWARE
ARG O:183 , LYS O:184 , LEU O:185 , HEM O:1000
BINDING SITE FOR RESIDUE NO2 O 2000
60
GC6
SOFTWARE
GLN O:17 , PRO O:18 , THR O:113 , LYS O:114 , LEU O:131 , ARG O:183
BINDING SITE FOR RESIDUE MES O 2001
61
GC7
SOFTWARE
LEU P:116 , ASN P:117 , TYR P:118 , ILE P:119 , VAL P:149 , LYS P:151 , MET P:167 , HIS P:170 , THR P:171 , THR P:174 , ARG P:183 , LEU P:185 , PHE P:196 , THR P:198 , PHE P:200 , LEU P:211 , MET P:212 , LEU P:215 , NO2 P:2000
BINDING SITE FOR RESIDUE HEM P 1000
62
GC8
SOFTWARE
ASP P:192 , GLU S:70 , THR S:231
BINDING SITE FOR RESIDUE CA S 1001
63
GC9
SOFTWARE
ARG P:183 , LEU P:185 , HEM P:1000
BINDING SITE FOR RESIDUE NO2 P 2000
64
HC1
SOFTWARE
THR P:16 , GLN P:17 , PRO P:18 , THR P:113 , LYS P:114 , ARG P:183 , LYS P:184
BINDING SITE FOR RESIDUE MES P 2001
65
HC2
SOFTWARE
LEU Q:116 , ASN Q:117 , TYR Q:118 , VAL Q:149 , LYS Q:151 , MET Q:167 , HIS Q:170 , THR Q:171 , THR Q:174 , ARG Q:183 , PHE Q:196 , THR Q:198 , PHE Q:200 , LEU Q:211 , MET Q:212 , LEU Q:215 , NO2 Q:2000
BINDING SITE FOR RESIDUE HEM Q 1000
66
HC3
SOFTWARE
ASP Q:192 , GLU T:70 , THR T:231
BINDING SITE FOR RESIDUE CA T 1001
67
HC4
SOFTWARE
ARG Q:183 , LYS Q:184 , LEU Q:185 , HEM Q:1000
BINDING SITE FOR RESIDUE NO2 Q 2000
68
HC5
SOFTWARE
THR Q:16 , GLN Q:17 , THR Q:113 , LYS Q:114 , LEU Q:116 , ARG Q:183
BINDING SITE FOR RESIDUE MES Q 2001
69
HC6
SOFTWARE
LEU R:116 , ASN R:117 , TYR R:118 , ILE R:119 , VAL R:149 , LYS R:151 , MET R:167 , HIS R:170 , THR R:171 , THR R:174 , LEU R:178 , ARG R:183 , PHE R:196 , THR R:198 , PHE R:200 , LEU R:211 , LEU R:215 , NO2 R:2000
BINDING SITE FOR RESIDUE HEM R 1000
70
HC7
SOFTWARE
GLU Q:70 , THR Q:231 , ASP R:192
BINDING SITE FOR RESIDUE CA Q 1001
71
HC8
SOFTWARE
ARG R:183 , LYS R:184 , LEU R:185 , THR R:198 , HEM R:1000
BINDING SITE FOR RESIDUE NO2 R 2000
72
HC9
SOFTWARE
THR R:16 , GLN R:17 , PRO R:18 , THR R:113 , LYS R:114 , LEU R:131 , ARG R:183
BINDING SITE FOR RESIDUE MES R 2001
73
IC1
SOFTWARE
LEU S:116 , ASN S:117 , TYR S:118 , ILE S:119 , VAL S:149 , LYS S:151 , MET S:167 , HIS S:170 , THR S:171 , THR S:174 , TYR S:177 , LEU S:178 , ARG S:183 , PHE S:196 , THR S:198 , PHE S:200 , LEU S:211 , LEU S:215 , NO2 S:2000
BINDING SITE FOR RESIDUE HEM S 1000
74
IC2
SOFTWARE
GLU R:70 , THR R:231 , ASP S:192
BINDING SITE FOR RESIDUE CA R 1001
75
IC3
SOFTWARE
ARG S:183 , THR S:198 , HEM S:1000
BINDING SITE FOR RESIDUE NO2 S 2000
76
IC4
SOFTWARE
THR S:16 , GLN S:17 , PRO S:18 , THR S:113 , LYS S:114 , LEU S:116 , LEU S:131 , ARG S:183
BINDING SITE FOR RESIDUE MES S 2001
77
IC5
SOFTWARE
LEU T:116 , ASN T:117 , TYR T:118 , VAL T:149 , MET T:167 , HIS T:170 , THR T:171 , THR T:174 , LEU T:178 , ARG T:183 , PHE T:196 , THR T:198 , PHE T:200 , LEU T:211 , MET T:212 , LEU T:215 , NO2 T:2000
BINDING SITE FOR RESIDUE HEM T 1000
78
IC6
SOFTWARE
GLU P:70 , THR P:231 , ASP T:192
BINDING SITE FOR RESIDUE CA P 1001
79
IC7
SOFTWARE
ARG T:183 , LYS T:184 , LEU T:185 , HEM T:1000
BINDING SITE FOR RESIDUE NO2 T 2000
80
IC8
SOFTWARE
THR T:16 , THR T:113 , LYS T:114 , LEU T:116 , LEU T:131 , ARG T:183 , LYS T:184
BINDING SITE FOR RESIDUE MES T 2001
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Chain S
Chain T
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1.6 MB)
Header - Asym.Unit
Biol.Unit 1 (416 KB)
Header - Biol.Unit 1
Biol.Unit 2 (424 KB)
Header - Biol.Unit 2
Biol.Unit 3 (422 KB)
Header - Biol.Unit 3
Biol.Unit 4 (427 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3Q08
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
