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Asym. Unit
Info
Asym.Unit (258 KB)
Biol.Unit 1 (252 KB)
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(1)
Title
:
CRYSTALS STRUCTURE OF ASPARTATE BETA-SEMIALDEHYDE DEHYDROGENASE COMPLEX WITH NADP AND 2-AMINOTEREPHTHALATE
Authors
:
A. G. Pavlovsky, R. E. Viola
Date
:
13 Dec 10 (Deposition) - 04 Jan 12 (Release) - 08 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Nadp, Oxidoreductase-Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. G. Pavlovsky, X. Liu, C. R. Faehnle, N. Potente, R. E. Viola
Structural Characterization Of Inhibitors With Selectivity Against Members Of A Homologous Enzyme Family.
Chem. Biol. Drug Des. V. 79 128 2012
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: 2-AMINOBENZENE-1,4-DICARBOXYLIC AC... (12Ta)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
4a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
4b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
3a: SODIUM ION (NAa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
12T
1
Ligand/Ion
2-AMINOBENZENE-1,4-DICARBOXYLIC ACID
2
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
3
NA
1
Ligand/Ion
SODIUM ION
4
NAP
2
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:9 , THR A:11 , GLY A:12 , ALA A:13 , VAL A:14 , ALA A:36 , SER A:37 , ARG A:39 , SER A:40 , THR A:57 , SER A:71 , ALA A:72 , GLY A:73 , THR A:76 , ASN A:94 , THR A:95 , SER A:158 , GLY A:159 , GLY A:161 , MET A:162 , ASN A:325 , LEU A:326 , GLY A:329 , HOH A:410 , HOH A:451 , HOH A:476 , HOH A:555 , HOH A:568 , HOH A:588 , HOH A:611
BINDING SITE FOR RESIDUE NAP A 367
02
AC2
SOFTWARE
GLY B:9 , THR B:11 , GLY B:12 , ALA B:13 , VAL B:14 , ALA B:36 , SER B:37 , ARG B:39 , SER B:40 , THR B:57 , SER B:71 , ALA B:72 , GLY B:73 , THR B:76 , ASN B:94 , THR B:95 , SER B:158 , GLY B:159 , GLY B:161 , MET B:162 , ASN B:325 , LEU B:326 , GLY B:329 , 12T B:371 , HOH B:484 , HOH B:547 , HOH B:555 , HOH B:619 , HOH B:624
BINDING SITE FOR RESIDUE NAP B 367
03
AC3
SOFTWARE
ILE A:273 , ALA A:274 , PHE A:276 , ALA A:279 , GLU B:343 , HOH B:667
BINDING SITE FOR RESIDUE NA A 368
04
AC4
SOFTWARE
THR A:26 , EDO A:369 , HOH A:500 , GLU B:24 , SER B:25 , TRP B:332 , GLU B:339 , HOH B:455 , HOH B:707
BINDING SITE FOR RESIDUE EDO B 368
05
AC5
SOFTWARE
GLU A:24 , SER A:25 , TRP A:332 , GLU A:339 , HOH A:376 , HOH A:500 , HOH A:528 , THR B:26 , EDO B:368
BINDING SITE FOR RESIDUE EDO A 369
06
AC6
SOFTWARE
SER A:250 , GLY A:298 , ASP A:324 , LEU A:326 , HOH A:393
BINDING SITE FOR RESIDUE EDO A 370
07
AC7
SOFTWARE
SER B:250 , GLY B:298 , ASP B:324 , LEU B:326 , HOH B:477
BINDING SITE FOR RESIDUE EDO B 369
08
AC8
SOFTWARE
LEU A:311 , ASP A:312 , HOH A:527 , HOH A:938 , LYS B:229
BINDING SITE FOR RESIDUE EDO A 371
09
AC9
SOFTWARE
ASN A:295 , GLY B:2
BINDING SITE FOR RESIDUE EDO A 372
10
BC1
SOFTWARE
GLY A:2 , ASN B:295 , HOH B:657
BINDING SITE FOR RESIDUE EDO B 370
11
BC2
SOFTWARE
ASN B:94 , ARG B:99 , GLY B:159 , ALA B:160 , ASP B:210 , GLU B:220 , LYS B:223 , ARG B:245 , NAP B:367 , HOH B:630 , HOH B:828
BINDING SITE FOR RESIDUE 12T B 371
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3pyxa2 (A:128-329)
1b: SCOP_d3pyxb2 (B:128-329)
2a: SCOP_d3pyxa1 (A:2-127,A:330-358)
2b: SCOP_d3pyxb1 (B:2-127,B:330-360)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
GAPDH-like
(99)
Protein domain
:
Aspartate beta-semialdehyde dehydrogenase
(31)
Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
(11)
1a
d3pyxa2
A:128-329
1b
d3pyxb2
B:128-329
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
Aspartate beta-semialdehyde dehydrogenase
(31)
Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
(11)
2a
d3pyxa1
A:2-127,A:330-358
2b
d3pyxb1
B:2-127,B:330-360
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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