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3PYB
Asym. Unit
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Asym.Unit (359 KB)
Biol.Unit 1 (122 KB)
Biol.Unit 2 (121 KB)
Biol.Unit 3 (120 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ENT-COPALYL DIPHOSPHATE SYNTHASE FROM ARABIDOPSIS THALIANA IN COMPLEX WITH 13-AZA-13,14-DIHYDROCOPALYL DIPHOSPHATE
Authors
:
M. Koksal, D. W. Christianson
Date
:
12 Dec 10 (Deposition) - 25 May 11 (Release) - 25 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.76
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Class I And Ii Terpene Cyclase Fold, Class Ii Diterpene Cyclase, Dxxdd Motif, Gibberellin Biosynthesis, Biosynthesis Of Ent-Copalyl Diphosphate, Isomerase
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Reference
:
M. Koksal, H. Hu, R. M. Coates, R. J. Peters, D. W. Christianson
Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana, A Protonation-Dependent Diterpene Cyclase
To Be Published
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
1i: PENTAETHYLENE GLYCOL (1PEi)
2a: 2-(METHYL{2-[(1S,4AS,8AS)-5,5,8A-T... (A3Ca)
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No.
Name
Count
Type
Full Name
1
1PE
9
Ligand/Ion
PENTAETHYLENE GLYCOL
2
A3C
1
Ligand/Ion
2-(METHYL{2-[(1S,4AS,8AS)-5,5,8A-TRIMETHYL-2-METHYLIDENEDECAHYDRONAPHTHALEN-1-YL]ETHYL}AMINO)ETHYLTRIHYDROGEN DIPHOSPHATE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:149 , HIS A:182 , LYS A:186 , GLU A:193 , GLN A:791 , SER A:795 , PHE A:799 , HOH A:846
BINDING SITE FOR RESIDUE A3C A 901
02
AC2
SOFTWARE
TYR A:427 , LYS A:444 , TYR A:448 , TYR A:483
BINDING SITE FOR RESIDUE 1PE A 911
03
AC3
SOFTWARE
SER A:657 , PHE A:658 , ASP A:667 , ASN A:669 , SER C:137 , LYS C:140
BINDING SITE FOR RESIDUE 1PE A 921
04
AC4
SOFTWARE
ASP A:380 , TYR A:511
BINDING SITE FOR RESIDUE 1PE A 931
05
AC5
SOFTWARE
LYS A:140 , ASN B:654 , SER B:657 , PHE B:658 , PHE B:661 , ASP B:667 , ASN B:669
BINDING SITE FOR RESIDUE 1PE A 811
06
AC6
SOFTWARE
HOH B:38 , TYR B:427 , LYS B:441 , LYS B:444 , GLU B:445 , TYR B:483 , GLU B:749
BINDING SITE FOR RESIDUE 1PE B 911
07
AC7
SOFTWARE
ILE B:208 , ASP B:377 , TYR B:511
BINDING SITE FOR RESIDUE 1PE B 931
08
AC8
SOFTWARE
PRO B:136 , LYS B:140 , ASN C:654 , SER C:657 , PHE C:658 , ASP C:667
BINDING SITE FOR RESIDUE 1PE B 921
09
AC9
SOFTWARE
TYR C:427 , LYS C:444 , TYR C:448 , TYR C:483 , GLU C:749 , HOH C:825
BINDING SITE FOR RESIDUE 1PE C 911
10
BC1
SOFTWARE
ILE C:208 , ASP C:377 , ASP C:379 , ASP C:380 , TYR C:511
BINDING SITE FOR RESIDUE 1PE C 931
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_Terpene_synth_3pybC01 (C:273-478)
1b: PFAM_Terpene_synth_3pybC02 (C:273-478)
1c: PFAM_Terpene_synth_3pybC03 (C:273-478)
2a: PFAM_Terpene_synth_C_3pybC04 (C:521-769)
2b: PFAM_Terpene_synth_C_3pybC05 (C:521-769)
2c: PFAM_Terpene_synth_C_3pybC06 (C:521-769)
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Clans
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(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: Terpene_synth]
(17)
Family
:
Terpene_synth
(17)
Arabidopsis thaliana (Mouse-ear cress)
(2)
1a
Terpene_synth-3pybC01
C:273-478
1b
Terpene_synth-3pybC02
C:273-478
1c
Terpene_synth-3pybC03
C:273-478
Clan
:
no clan defined [family: Terpene_synth_C]
(19)
Family
:
Terpene_synth_C
(19)
Arabidopsis thaliana (Mouse-ear cress)
(2)
2a
Terpene_synth_C-3pybC04
C:521-769
2b
Terpene_synth_C-3pybC05
C:521-769
2c
Terpene_synth_C-3pybC06
C:521-769
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Asym.Unit (359 KB)
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