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Asym. Unit
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Asym.Unit (564 KB)
Biol.Unit 1 (555 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FERROUS CO ADDUCT OF MAUG IN COMPLEX WITH PRE-METHYLAMINE DEHYDROGENASE
Authors
:
E. T. Yukl, B. R Goblirsch, C. M Wilmot
Date
:
10 Dec 10 (Deposition) - 23 Mar 11 (Release) - 20 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.16
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Oxidoreductase, Electron Transfer, Periplasmic Space, Oxidoreductase- Electron Transport Complex
(Keyword Search:
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)
Reference
:
E. T. Yukl, B. R. Goblirsch, V. L. Davidson, C. M. Wilmot
Crystal Structures Of Co And No Adducts Of Maug In Complex With Pre-Methylamine Dehydrogenase: Implications For The Mechanism Of Dioxygen Activation.
Biochemistry V. 50 2931 2011
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Hetero Components
(7, 17)
Info
All Hetero Components
1a: 7-HYDROXY-L-TRYPTOPHAN (0AFa)
1b: 7-HYDROXY-L-TRYPTOPHAN (0AFb)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
4a: CARBON MONOXIDE (CMOa)
4b: CARBON MONOXIDE (CMOb)
5a: HEME C (HECa)
5b: HEME C (HECb)
5c: HEME C (HECc)
5d: HEME C (HECd)
6a: SODIUM ION (NAa)
6b: SODIUM ION (NAb)
6c: SODIUM ION (NAc)
7a: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-ME... (PG6a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0AF
2
Mod. Amino Acid
7-HYDROXY-L-TRYPTOPHAN
2
ACT
3
Ligand/Ion
ACETATE ION
3
CA
2
Ligand/Ion
CALCIUM ION
4
CMO
2
Ligand/Ion
CARBON MONOXIDE
5
HEC
4
Ligand/Ion
HEME C
6
NA
3
Ligand/Ion
SODIUM ION
7
PG6
1
Ligand/Ion
1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:231 , THR A:233 , HOH A:382 , HOH A:388 , HOH A:519 , HOH A:680
BINDING SITE FOR RESIDUE NA A 374
02
AC2
SOFTWARE
LEU A:250 , ARG A:252 , ILE A:255 , HOH A:436 , HOH A:865 , HOH A:1080
BINDING SITE FOR RESIDUE NA A 375
03
AC3
SOFTWARE
PHE A:92 , GLN A:103 , PRO A:107 , HEC A:500
BINDING SITE FOR RESIDUE CMO A 376
04
AC4
SOFTWARE
GLN A:29 , SER A:30 , CYS A:31 , CYS A:34 , HIS A:35 , VAL A:55 , ARG A:65 , THR A:67 , PRO A:68 , LEU A:70 , GLN A:91 , PHE A:92 , TRP A:93 , ARG A:96 , LEU A:100 , GLN A:103 , ALA A:104 , PRO A:107 , GLU A:113 , GLN A:163 , LYS A:265 , CMO A:376 , HOH A:393 , HOH A:703
BINDING SITE FOR RESIDUE HEC A 500
05
AC5
SOFTWARE
TRP A:93 , ASN A:200 , CYS A:201 , CYS A:204 , HIS A:205 , HIS A:224 , ILE A:226 , LEU A:228 , PHE A:264 , PRO A:267 , LEU A:269 , TYR A:278 , MET A:279 , HIS A:280 , LEU A:287 , TYR A:294 , SER A:324 , HOH A:394 , HOH A:395 , HOH A:406 , HOH A:408 , HOH A:428
BINDING SITE FOR RESIDUE HEC A 600
06
AC6
SOFTWARE
ASN A:66 , THR A:275 , PRO A:277 , HOH A:398 , HOH A:406 , HOH A:408 , HOH A:430
BINDING SITE FOR RESIDUE CA A 400
07
AC7
SOFTWARE
ASN B:231 , THR B:233 , HOH B:437 , HOH B:440 , HOH B:444 , HOH B:974
BINDING SITE FOR RESIDUE NA B 374
08
AC8
SOFTWARE
PHE B:92 , GLN B:103 , PRO B:107 , GLU B:113 , HEC B:500
BINDING SITE FOR RESIDUE CMO B 375
09
AC9
SOFTWARE
GLN B:29 , SER B:30 , CYS B:31 , CYS B:34 , HIS B:35 , ARG B:65 , THR B:67 , PRO B:68 , LEU B:70 , GLN B:91 , PHE B:92 , TRP B:93 , ARG B:96 , LEU B:100 , GLN B:103 , PRO B:107 , MET B:114 , GLN B:163 , LYS B:265 , CMO B:375 , HOH B:502 , HOH B:632 , HOH B:750
BINDING SITE FOR RESIDUE HEC B 500
10
BC1
SOFTWARE
TRP B:93 , ASN B:200 , CYS B:201 , CYS B:204 , HIS B:205 , HIS B:224 , LEU B:228 , PHE B:264 , PRO B:267 , TYR B:278 , MET B:279 , HIS B:280 , LEU B:287 , TYR B:294 , SER B:324 , HOH B:402 , HOH B:418 , HOH B:449 , HOH B:461 , HOH B:673
BINDING SITE FOR RESIDUE HEC B 600
11
BC2
SOFTWARE
ASN B:66 , THR B:275 , PRO B:277 , HOH B:379 , HOH B:402 , HOH B:405 , HOH B:461
BINDING SITE FOR RESIDUE CA B 400
12
BC3
SOFTWARE
SER C:60 , GLY C:93 , TRP D:304
BINDING SITE FOR RESIDUE ACT C 138
13
BC4
SOFTWARE
ARG D:35 , LEU D:37 , GLU D:38
BINDING SITE FOR RESIDUE ACT D 387
14
BC5
SOFTWARE
ARG F:35 , LEU F:37 , GLU F:38
BINDING SITE FOR RESIDUE ACT F 387
15
BC6
SOFTWARE
ARG A:25 , ASN A:26 , ARG A:125 , ASP A:128 , PHE F:261 , HOH F:985
BINDING SITE FOR RESIDUE PG6 F 388
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: CYTC (A:9-130,B:9-130|A:176-350,B:176-35...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
MAUG_PARDP
29-150
196-370
4
A:9-130
B:9-130
A:176-350
B:176-350
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3pxtd_ (D:)
1b: SCOP_d3pxtf_ (F:)
2a: SCOP_d3pxtc_ (C:)
2b: SCOP_d3pxte_ (E:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(31)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Paracoccus denitrificans [TaxId: 318586]
(18)
1a
d3pxtd_
D:
1b
d3pxtf_
F:
Class
:
Small proteins
(3458)
Fold
:
Methylamine dehydrogenase, L chain
(68)
Superfamily
:
Methylamine dehydrogenase, L chain
(68)
Family
:
Methylamine dehydrogenase, L chain
(41)
Protein domain
:
automated matches
(32)
Paracoccus denitrificans [TaxId: 318586]
(19)
2a
d3pxtc_
C:
2b
d3pxte_
E:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Me_amine_dh_H_3pxtF01 (F:43-384)
1b: PFAM_Me_amine_dh_H_3pxtF02 (F:43-384)
2a: PFAM_CCP_MauG_3pxtB01 (B:7-186)
2b: PFAM_CCP_MauG_3pxtB02 (B:7-186)
3a: PFAM_Me_amine_dh_L_3pxtE01 (E:8-130)
3b: PFAM_Me_amine_dh_L_3pxtE02 (E:8-130)
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Clans
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)
(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Beta_propeller
(192)
Family
:
Me-amine-dh_H
(13)
Paracoccus denitrificans (strain Pd 1222)
(6)
1a
Me-amine-dh_H-3pxtF01
F:43-384
1b
Me-amine-dh_H-3pxtF02
F:43-384
Clan
:
Cytochrome-c
(108)
Family
:
CCP_MauG
(10)
Paracoccus denitrificans (strain Pd 1222)
(6)
2a
CCP_MauG-3pxtB01
B:7-186
2b
CCP_MauG-3pxtB02
B:7-186
Clan
:
no clan defined [family: Me-amine-dh_L]
(16)
Family
:
Me-amine-dh_L
(16)
Paracoccus denitrificans
(7)
3a
Me-amine-dh_L-3pxtE01
E:8-130
3b
Me-amine-dh_L-3pxtE02
E:8-130
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