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3PXA
Asym. Unit
Info
Asym.Unit (79 KB)
Biol.Unit 1 (73 KB)
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(1)
Title
:
IMPACT OF BRCA1 BRCT DOMAIN MISSENSE SUBSTITUTIONS ON PHOSPHO-PEPTIDE RECOGNITION: G1656D
Authors
:
N. Coquelle, R. Green, J. N. M. Glover
Date
:
09 Dec 10 (Deposition) - 20 Apr 11 (Release) - 15 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Brca1 Protein, Missense, Phosphopeptide Recognition, Brct Tandem Repeats, Bach1 Ctip Abraxas, Nuclear Protein, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Coquelle, R. Green, J. N. Glover
Impact Of Brca1 Brct Domain Missense Substitutions On Phosphopeptide Recognition.
Biochemistry V. 50 4579 2011
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: NICKEL (II) ION (NIa)
2a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NI
1
Ligand/Ion
NICKEL (II) ION
2
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:15 , HIS A:1673 , HIS A:1805
BINDING SITE FOR RESIDUE NI A 100
2
AC2
SOFTWARE
HOH A:4 , HOH A:6 , SER A:1655 , ASP A:1656 , LYS A:1702
BINDING SITE FOR RESIDUE SO4 A 101
[
close Site info
]
SAPs(SNPs)/Variants
(48, 48)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_070494 (S1651F, chain A, )
02: VAR_070495 (S1651P, chain A, )
03: VAR_007795 (M1652I, chain A, )
04: VAR_070496 (S1655F, chain A, )
05: VAR_052080 (F1662C, chain A, )
06: VAR_020700 (V1665M, chain A, )
07: VAR_063902 (T1685A, chain A, )
08: VAR_063903 (T1685I, chain A, )
09: VAR_070497 (H1686Q, chain A, )
10: VAR_070498 (H1686R, chain A, )
11: VAR_063904 (M1689R, chain A, )
12: VAR_020701 (K1690Q, chain A, )
13: VAR_070500 (T1691I, chain A, )
14: VAR_008763 (D1692N, chain A, )
15: VAR_020702 (C1697R, chain A, )
16: VAR_070501 (R1699Q, chain A, )
17: VAR_020703 (R1699W, chain A, )
18: VAR_070502 (G1706A, chain A, )
19: VAR_063905 (G1706E, chain A, )
20: VAR_007796 (A1708E, chain A, )
21: VAR_007797 (V1713G, chain A, )
22: VAR_063906 (S1715R, chain A, )
23: VAR_070503 (W1718C, chain A, )
24: VAR_070504 (T1720A, chain A, )
25: VAR_070505 (E1735K, chain A, )
26: VAR_070506 (V1736A, chain A, )
27: VAR_063907 (G1738R, chain A, )
28: VAR_070507 (D1739G, chain A, )
29: VAR_070508 (D1739V, chain A, )
30: VAR_070509 (H1746Q, chain A, )
31: VAR_007798 (P1749R, chain A, )
32: VAR_070510 (R1753T, chain A, )
33: VAR_063908 (L1764P, chain A, )
34: VAR_063909 (I1766S, chain A, )
35: VAR_070511 (C1767S, chain A, )
36: VAR_070512 (G1770V, chain A, )
37: VAR_063212 (M1775K, chain A, )
38: VAR_007799 (M1775R, chain A, )
39: VAR_008764 (P1776S, chain A, )
40: VAR_070513 (W1782C, chain A, )
41: VAR_020704 (L1786P, chain A, )
42: VAR_063910 (G1788V, chain A, )
43: VAR_070514 (A1789T, chain A, )
44: VAR_070515 (E1794D, chain A, )
45: VAR_070516 (V1804D, chain A, )
46: VAR_070517 (P1812R, chain A, )
47: VAR_008765 (P1812S, chain A, )
48: VAR_070518 (W1837R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_070494
S
1651
F
BRCA1_HUMAN
Unclassified
---
A
S
1651
F
02
UniProt
VAR_070495
S
1651
P
BRCA1_HUMAN
Unclassified
---
A
S
1651
P
03
UniProt
VAR_007795
M
1652
I
BRCA1_HUMAN
Polymorphism
1799967
A
M
1652
I
04
UniProt
VAR_070496
S
1655
F
BRCA1_HUMAN
Unclassified
---
A
S
1655
F
05
UniProt
VAR_052080
F
1662
C
BRCA1_HUMAN
Polymorphism
28897695
A
F
1662
C
06
UniProt
VAR_020700
V
1665
M
BRCA1_HUMAN
Polymorphism
---
A
V
1665
M
07
UniProt
VAR_063902
T
1685
A
BRCA1_HUMAN
Unclassified
---
A
T
1685
A
08
UniProt
VAR_063903
T
1685
I
BRCA1_HUMAN
Unclassified
---
A
T
1685
I
09
UniProt
VAR_070497
H
1686
Q
BRCA1_HUMAN
Unclassified
---
A
H
1686
Q
10
UniProt
VAR_070498
H
1686
R
BRCA1_HUMAN
Unclassified
---
A
H
1686
R
11
UniProt
VAR_063904
M
1689
R
BRCA1_HUMAN
Unclassified
---
A
M
1689
R
12
UniProt
VAR_020701
K
1690
Q
BRCA1_HUMAN
Unclassified
---
A
K
1690
Q
13
UniProt
VAR_070500
T
1691
I
BRCA1_HUMAN
Unclassified
---
A
T
1691
I
14
UniProt
VAR_008763
D
1692
N
BRCA1_HUMAN
Unclassified
---
A
D
1692
N
15
UniProt
VAR_020702
C
1697
R
BRCA1_HUMAN
Disease (OC)
---
A
C
1697
R
16
UniProt
VAR_070501
R
1699
Q
BRCA1_HUMAN
Unclassified
---
A
R
1699
Q
17
UniProt
VAR_020703
R
1699
W
BRCA1_HUMAN
Disease (OC)
---
A
R
1699
W
18
UniProt
VAR_070502
G
1706
A
BRCA1_HUMAN
Unclassified
---
A
G
1706
A
19
UniProt
VAR_063905
G
1706
E
BRCA1_HUMAN
Unclassified
80356860
A
G
1706
E
20
UniProt
VAR_007796
A
1708
E
BRCA1_HUMAN
Disease (BC)
28897696
A
A
1708
E
21
UniProt
VAR_007797
V
1713
G
BRCA1_HUMAN
Polymorphism
---
A
V
1713
G
22
UniProt
VAR_063906
S
1715
R
BRCA1_HUMAN
Unclassified
---
A
S
1715
R
23
UniProt
VAR_070503
W
1718
C
BRCA1_HUMAN
Unclassified
---
A
W
1718
C
24
UniProt
VAR_070504
T
1720
A
BRCA1_HUMAN
Unclassified
---
A
T
1720
A
25
UniProt
VAR_070505
E
1735
K
BRCA1_HUMAN
Unclassified
---
A
E
1735
K
26
UniProt
VAR_070506
V
1736
A
BRCA1_HUMAN
Unclassified
---
A
V
1736
A
27
UniProt
VAR_063907
G
1738
R
BRCA1_HUMAN
Unclassified
---
A
G
1738
R
28
UniProt
VAR_070507
D
1739
G
BRCA1_HUMAN
Unclassified
---
A
D
1739
G
29
UniProt
VAR_070508
D
1739
V
BRCA1_HUMAN
Unclassified
---
A
D
1739
V
30
UniProt
VAR_070509
H
1746
Q
BRCA1_HUMAN
Unclassified
---
A
H
1746
Q
31
UniProt
VAR_007798
P
1749
R
BRCA1_HUMAN
Unclassified
---
A
P
1749
R
32
UniProt
VAR_070510
R
1753
T
BRCA1_HUMAN
Unclassified
---
A
R
1753
T
33
UniProt
VAR_063908
L
1764
P
BRCA1_HUMAN
Unclassified
---
A
L
1764
P
34
UniProt
VAR_063909
I
1766
S
BRCA1_HUMAN
Unclassified
---
A
I
1766
S
35
UniProt
VAR_070511
C
1767
S
BRCA1_HUMAN
Unclassified
---
A
C
1767
S
36
UniProt
VAR_070512
G
1770
V
BRCA1_HUMAN
Unclassified
---
A
G
1770
V
37
UniProt
VAR_063212
M
1775
K
BRCA1_HUMAN
Disease (BC)
---
A
M
1775
K
38
UniProt
VAR_007799
M
1775
R
BRCA1_HUMAN
Disease (BC)
---
A
M
1775
R
39
UniProt
VAR_008764
P
1776
S
BRCA1_HUMAN
Unclassified
1800757
A
P
1776
S
40
UniProt
VAR_070513
W
1782
C
BRCA1_HUMAN
Unclassified
---
A
W
1782
C
41
UniProt
VAR_020704
L
1786
P
BRCA1_HUMAN
Unclassified
---
A
L
1786
P
42
UniProt
VAR_063910
G
1788
V
BRCA1_HUMAN
Unclassified
---
A
G
1788
V
43
UniProt
VAR_070514
A
1789
T
BRCA1_HUMAN
Unclassified
---
A
A
1789
T
44
UniProt
VAR_070515
E
1794
D
BRCA1_HUMAN
Unclassified
---
A
E
1794
D
45
UniProt
VAR_070516
V
1804
D
BRCA1_HUMAN
Unclassified
---
A
V
1804
D
46
UniProt
VAR_070517
P
1812
R
BRCA1_HUMAN
Unclassified
---
A
P
1812
R
47
UniProt
VAR_008765
P
1812
S
BRCA1_HUMAN
Unclassified
1800751
A
P
1812
S
48
UniProt
VAR_070518
W
1837
R
BRCA1_HUMAN
Unclassified
---
A
W
1837
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: BRCT (-|A:1756-1855)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BRCT
PS50172
BRCT domain profile.
BRCA1_HUMAN
1642-1736
1756-1855
1
-
A:1756-1855
[
close PROSITE info
]
Exons
(9, 9)
Info
All Exons
Exon 1.18a (A:1649-1662)
Exon 1.19a (A:1663-1692)
Exon 1.20 (A:1692-1718)
Exon 1.21c (A:1718-1731)
Exon 1.22 (A:1732-1759)
Exon 1.23 (A:1760-1778)
Exon 1.24 (A:1778-1802)
Exon 1.25 (A:1803-1823 (gaps))
Exon 1.26e (A:1823-1859)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.17/1.18a
02: Boundary 1.18a/1.19a
03: Boundary 1.19a/1.20
04: Boundary 1.20/1.21c
05: Boundary 1.21c/1.22
06: Boundary 1.22/1.23
07: Boundary 1.23/1.24
08: Boundary 1.24/1.25
09: Boundary 1.25/1.26e
10: Boundary 1.26e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1g
ENST00000357654
1g
ENSE00001871077
chr17:
41277387-41277288
100
BRCA1_HUMAN
-
0
0
-
-
1.3
ENST00000357654
3
ENSE00002186519
chr17:
41276132-41276034
99
BRCA1_HUMAN
1-27
27
0
-
-
1.4
ENST00000357654
4
ENSE00001681246
chr17:
41267796-41267743
54
BRCA1_HUMAN
27-45
19
0
-
-
1.6b
ENST00000357654
6b
ENSE00001682558
chr17:
41258550-41258473
78
BRCA1_HUMAN
45-71
27
0
-
-
1.7a
ENST00000357654
7a
ENSE00001639754
chr17:
41256973-41256885
89
BRCA1_HUMAN
71-101
31
0
-
-
1.8b
ENST00000357654
8b
ENSE00001741211
chr17:
41256278-41256139
140
BRCA1_HUMAN
101-147
47
0
-
-
1.9b
ENST00000357654
9b
ENSE00001734284
chr17:
41251897-41251792
106
BRCA1_HUMAN
148-183
36
0
-
-
1.10
ENST00000357654
10
ENSE00001677807
chr17:
41249306-41249261
46
BRCA1_HUMAN
183-198
16
0
-
-
1.11
ENST00000357654
11
ENSE00002148837
chr17:
41247939-41247863
77
BRCA1_HUMAN
198-224
27
0
-
-
1.12f
ENST00000357654
12f
ENSE00001646430
chr17:
41246877-41243452
3426
BRCA1_HUMAN
224-1366
1143
0
-
-
1.13
ENST00000357654
13
ENSE00000729436
chr17:
41243049-41242961
89
BRCA1_HUMAN
1366-1395
30
0
-
-
1.14
ENST00000357654
14
ENSE00000371140
chr17:
41234592-41234421
172
BRCA1_HUMAN
1396-1453
58
0
-
-
1.16a
ENST00000357654
16a
ENSE00002181963
chr17:
41228631-41228505
127
BRCA1_HUMAN
1453-1495
43
0
-
-
1.17
ENST00000357654
17
ENSE00000865524
chr17:
41226538-41226348
191
BRCA1_HUMAN
1495-1559
65
0
-
-
1.18a
ENST00000357654
18a
ENSE00000865521
chr17:
41223255-41222945
311
BRCA1_HUMAN
1559-1662
104
1
A:1649-1662
14
1.19a
ENST00000357654
19a
ENSE00000865520
chr17:
41219712-41219625
88
BRCA1_HUMAN
1663-1692
30
1
A:1663-1692
30
1.20
ENST00000357654
20
ENSE00001368002
chr17:
41215968-41215891
78
BRCA1_HUMAN
1692-1718
27
1
A:1692-1718
27
1.21c
ENST00000357654
21c
ENSE00001383927
chr17:
41215390-41215350
41
BRCA1_HUMAN
1718-1731
14
1
A:1718-1731
14
1.22
ENST00000357654
22
ENSE00001383775
chr17:
41209152-41209069
84
BRCA1_HUMAN
1732-1759
28
1
A:1732-1759
28
1.23
ENST00000357654
23
ENSE00000865503
chr17:
41203134-41203080
55
BRCA1_HUMAN
1760-1778
19
1
A:1760-1778
19
1.24
ENST00000357654
24
ENSE00000865496
chr17:
41201211-41201138
74
BRCA1_HUMAN
1778-1802
25
1
A:1778-1802
25
1.25
ENST00000357654
25
ENSE00000865492
chr17:
41199720-41199660
61
BRCA1_HUMAN
1803-1823
21
1
A:1803-1823 (gaps)
21
1.26e
ENST00000357654
26e
ENSE00001814242
chr17:
41197819-41196312
1508
BRCA1_HUMAN
1823-1863
41
1
A:1823-1859
37
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3pxaa1 (A:1649-1757)
1b: SCOP_d3pxaa2 (A:1758-1859)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
BRCT domain
(29)
Superfamily
:
BRCT domain
(29)
Family
:
BRCT domain
(15)
Protein domain
:
Breast cancer associated protein, BRCA1
(15)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d3pxaa1
A:1649-1757
1b
d3pxaa2
A:1758-1859
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_BRCT_3pxaA01 (A:1756-1842)
1b: PFAM_BRCT_3pxaA02 (A:1756-1842)
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Select:
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Clans
(
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(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
BRCT-like
(38)
Family
:
BRCT
(35)
Homo sapiens (Human)
(27)
1a
BRCT-3pxaA01
A:1756-1842
1b
BRCT-3pxaA02
A:1756-1842
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close Pfam info
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Asymmetric Unit 1
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