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3PVU
Asym. Unit
Info
Asym.Unit (356 KB)
Biol.Unit 1 (349 KB)
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(1)
Title
:
BOVINE GRK2 IN COMPLEX WITH GBETAGAMMA SUBUNITS AND A SELECTIVE KINASE INHIBITOR (CMPD101)
Authors
:
D. M. Thal, J. J. Tesmer
Date
:
07 Dec 10 (Deposition) - 01 Jun 11 (Release) - 27 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.48
Chains
:
Asym. Unit : A,B,G
Biol. Unit 1: A,B,G (1x)
Keywords
:
Transferase, Serine/Threonine-Protein Kinase, Atp-Binding, Inhibitor, Membrane, Transferase-Signaling Protein-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. M. Thal, R. Y. Yeow, C. Schoenau, J. Huber, J. J. Tesmer
Molecular Mechanism Of Selectivity Among G Protein-Coupled Receptor Kinase 2 Inhibitors.
Mol. Pharmacol. V. 80 294 2011
[
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: O-METHYLCYSTEINE (CMTa)
2a: 3-({[4-METHYL-5-(PYRIDIN-4-YL)-4H-... (QRWa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CMT
1
Mod. Amino Acid
O-METHYLCYSTEINE
2
QRW
1
Ligand/Ion
3-({[4-METHYL-5-(PYRIDIN-4-YL)-4H-1,2,4-TRIAZOL-3-YL]METHYL}AMINO)-N-[2-(TRIFLUOROMETHYL)BENZYL]BENZAMIDE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:198 , GLY A:200 , GLY A:201 , PHE A:202 , GLY A:203 , VAL A:205 , LYS A:220 , LEU A:222 , ASP A:272 , MET A:274 , LEU A:324 , SER A:334 , ASP A:335 , GLY A:337 , LEU A:338
BINDING SITE FOR RESIDUE QRW A 800
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(6, 8)
Info
All PROSITE Patterns/Profiles
1: RGS (A:54-175)
2: WD_REPEATS_1 (B:70-84|B:157-171|B:285-299)
3: PROTEIN_KINASE_ATP (A:197-220)
4: PROTEIN_KINASE_ST (A:313-325)
5: AGC_KINASE_CTER (A:454-521)
6: PH_DOMAIN (A:558-652)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RGS
PS50132
RGS domain profile.
ARBK1_BOVIN
54-175
1
A:54-175
2
WD_REPEATS_1
PS00678
Trp-Asp (WD) repeats signature.
GBB1_BOVIN
70-84
157-171
285-299
3
B:70-84
B:157-171
B:285-299
3
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
ARBK1_BOVIN
197-220
1
A:197-220
4
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
ARBK1_BOVIN
313-325
1
A:313-325
5
AGC_KINASE_CTER
PS51285
AGC-kinase C-terminal domain profile.
ARBK1_BOVIN
454-521
1
A:454-521
6
PH_DOMAIN
PS50003
PH domain profile.
ARBK1_BOVIN
558-652
1
A:558-652
[
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]
Exons
(11, 11)
Info
All Exons
Exon 1.3 (G:8-29)
Exon 1.4 (G:30-68)
Exon 2.3 (B:2-19)
Exon 2.4 (B:20-32)
Exon 2.5 (B:33-68)
Exon 2.6 (B:68-89)
Exon 2.7 (B:90-144)
Exon 2.8 (B:144-166)
Exon 2.9 (B:166-233)
Exon 2.10 (B:234-306)
Exon 2.11 (B:306-340)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/-
04: Boundary 2.1/2.3
05: Boundary 2.3/2.4
06: Boundary 2.4/2.5
07: Boundary 2.5/2.6
08: Boundary 2.6/2.7
09: Boundary 2.7/2.8
10: Boundary 2.8/2.9
11: Boundary 2.9/2.10
12: Boundary 2.10/2.11
13: Boundary 2.11/2.12b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000003959
1
ENSBTAE00000426893
chr10:
44963483-44963676
194
GBG2_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000003959
2
ENSBTAE00000334135
chr10:
44982173-44982213
41
GBG2_BOVIN
-
0
0
-
-
1.3
ENSBTAT00000003959
3
ENSBTAE00000031865
chr10:
45110571-45110684
114
GBG2_BOVIN
1-29
29
1
G:8-29
22
1.4
ENSBTAT00000003959
4
ENSBTAE00000031866
chr10:
45131763-45132218
456
GBG2_BOVIN
30-71
42
1
G:30-68
39
2.1
ENSBTAT00000045065
1
ENSBTAE00000334067
chr16:
48127959-48128171
213
GBB1_BOVIN
-
0
0
-
-
2.3
ENSBTAT00000045065
3
ENSBTAE00000002006
chr16:
48183972-48184074
103
GBB1_BOVIN
1-19
19
1
B:2-19
18
2.4
ENSBTAT00000045065
4
ENSBTAE00000002007
chr16:
48187973-48188011
39
GBB1_BOVIN
20-32
13
1
B:20-32
13
2.5
ENSBTAT00000045065
5
ENSBTAE00000376692
chr16:
48189546-48189652
107
GBB1_BOVIN
33-68
36
1
B:33-68
36
2.6
ENSBTAT00000045065
6
ENSBTAE00000386769
chr16:
48193508-48193571
64
GBB1_BOVIN
68-89
22
1
B:68-89
22
2.7
ENSBTAT00000045065
7
ENSBTAE00000002010
chr16:
48194640-48194802
163
GBB1_BOVIN
90-144
55
1
B:90-144
55
2.8
ENSBTAT00000045065
8
ENSBTAE00000394803
chr16:
48200709-48200775
67
GBB1_BOVIN
144-166
23
1
B:144-166
23
2.9
ENSBTAT00000045065
9
ENSBTAE00000002012
chr16:
48202132-48202333
202
GBB1_BOVIN
166-233
68
1
B:166-233
68
2.10
ENSBTAT00000045065
10
ENSBTAE00000388531
chr16:
48203047-48203263
217
GBB1_BOVIN
234-306
73
1
B:234-306
73
2.11
ENSBTAT00000045065
11
ENSBTAE00000002014
chr16:
48203934-48204049
116
GBB1_BOVIN
306-340
35
1
B:306-340
35
2.12b
ENSBTAT00000045065
12b
ENSBTAE00000334058
chr16:
48204269-48205916
1648
GBB1_BOVIN
-
0
0
-
-
[
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]
SCOP Domains
(5, 5)
Info
All SCOP Domains
1a: SCOP_d3pvug_ (G:)
2a: SCOP_d3pvua1 (A:30-185)
3a: SCOP_d3pvub_ (B:)
4a: SCOP_d3pvua3 (A:550-668)
5a: SCOP_d3pvua2 (A:186-549)
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Non-globular all-alpha subunits of globular proteins
(135)
Superfamily
:
Transducin (heterotrimeric G protein), gamma chain
(19)
Family
:
Transducin (heterotrimeric G protein), gamma chain
(19)
Protein domain
:
Transducin (heterotrimeric G protein), gamma chain
(19)
Cow (Bos taurus) [TaxId: 9913]
(19)
1a
d3pvug_
G:
Fold
:
Regulator of G-protein signaling, RGS
(52)
Superfamily
:
Regulator of G-protein signaling, RGS
(52)
Family
:
Regulator of G-protein signaling, RGS
(27)
Protein domain
:
G-protein coupled receptor kinase 2, N-terminal domain
(6)
Cow (Bos taurus) [TaxId: 9913]
(6)
2a
d3pvua1
A:30-185
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
WD40 repeat-like
(95)
Family
:
WD40-repeat
(53)
Protein domain
:
beta1-subunit of the signal-transducing G protein heterotrimer
(19)
Cow (Bos taurus) [TaxId: 9913]
(19)
3a
d3pvub_
B:
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
(7)
Cow (Bos taurus) [TaxId: 9913]
(6)
4a
d3pvua3
A:550-668
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
G-protein coupled receptor kinase 2
(6)
Cow (Bos taurus) [TaxId: 9913]
(6)
5a
d3pvua2
A:186-549
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(5, 11)
Info
all PFAM domains
1a: PFAM_WD40_3pvuB01 (B:304-340)
1b: PFAM_WD40_3pvuB02 (B:304-340)
1c: PFAM_WD40_3pvuB03 (B:304-340)
1d: PFAM_WD40_3pvuB04 (B:304-340)
1e: PFAM_WD40_3pvuB05 (B:304-340)
1f: PFAM_WD40_3pvuB06 (B:304-340)
1g: PFAM_WD40_3pvuB07 (B:304-340)
2a: PFAM_PH_3pvuA01 (A:559-652)
3a: PFAM_Pkinase_3pvuA02 (A:191-453)
4a: PFAM_RGS_3pvuA03 (A:54-174)
5a: PFAM_G_gamma_3pvuG01 (G:8-68)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Beta_propeller
(192)
Family
:
WD40
(64)
Bos taurus (Bovine)
(19)
1a
WD40-3pvuB01
B:304-340
1b
WD40-3pvuB02
B:304-340
1c
WD40-3pvuB03
B:304-340
1d
WD40-3pvuB04
B:304-340
1e
WD40-3pvuB05
B:304-340
1f
WD40-3pvuB06
B:304-340
1g
WD40-3pvuB07
B:304-340
Clan
:
PH
(111)
Family
:
PH
(71)
Bos taurus (Bovine)
(5)
2a
PH-3pvuA01
A:559-652
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Bos taurus (Bovine)
(47)
3a
Pkinase-3pvuA02
A:191-453
Clan
:
RGS
(17)
Family
:
RGS
(16)
Bos taurus (Bovine)
(6)
4a
RGS-3pvuA03
A:54-174
Clan
:
no clan defined [family: G-gamma]
(10)
Family
:
G-gamma
(10)
Bos taurus (Bovine)
(9)
5a
G-gamma-3pvuG01
G:8-68
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