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3PV0
Asym. Unit
Info
Asym.Unit (636 KB)
Biol.Unit 1 (628 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PRE-TRANSLOCATION STATE MBP-MALTOSE TRANSPORTER COMPLEX WITHOUT NUCLEOTIDE
Authors
:
M. L. Oldham, J. Chen
Date
:
06 Dec 10 (Deposition) - 18 May 11 (Release) - 22 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,E,F,G
Biol. Unit 1: A,B,E,F,G (1x)
Keywords
:
Atp Binding Cassette, Nucleotide Binding Domain, Substrate Binding Protein, Abc Transporter, Importer, Atpase, Atp Binding, Maltodextrin Binding, Transmembrane Integral Membrane, Transport Protein, Membrane Protein
(Keyword Search:
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Reference
:
M. L. Oldham, J. Chen
Crystal Structure Of The Maltose Transporter In A Pretranslocation Intermediate State.
Science V. 332 1202 2011
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: MALTOSE (MALa)
1b: MALTOSE (MALb)
2a: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MAL
2
Ligand/Ion
MALTOSE
2
PGV
1
Ligand/Ion
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN E:12 , ASP E:14 , LYS E:15 , TRP E:62 , ALA E:63 , ASP E:65 , ARG E:66 , GLU E:111 , GLU E:153 , PRO E:154 , TYR E:155 , PHE E:156 , TRP E:340 , GLN G:256
BINDING SITE FOR RESIDUE MAL E 2002
2
AC2
SOFTWARE
TYR F:325 , SER F:329 , ASN F:376 , LEU F:379 , GLY F:380 , TYR F:383 , SER F:433 , PHE F:436 , ASN F:437 , ASN F:440
BINDING SITE FOR RESIDUE MAL F 2001
3
AC3
SOFTWARE
VAL F:301 , CYS F:304 , LEU F:305 , TRP F:308 , PRO F:410 , ASN F:413 , ARG G:12 , THR G:16 , LEU G:19
BINDING SITE FOR RESIDUE PGV F 4001
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 5)
Info
All PROSITE Patterns/Profiles
1: ABC_TM1 (G:85-281,F:281-505)
2: SBP_BACTERIAL_1 (E:107-124)
3: ABC_TRANSPORTER_1 (A:134-148,B:134-148)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ABC_TM1
PS50928
ABC transporter integral membrane type-1 domain profile.
MALG_ECOLI
85-281
1
G:85-281
MALF_ECOLI
281-505
1
F:281-505
2
SBP_BACTERIAL_1
PS01037
Bacterial extracellular solute-binding proteins, family 1 signature.
MALE_ECOLI
133-150
1
E:107-124
3
ABC_TRANSPORTER_1
PS00211
ABC transporters family signature.
MALK_ECOLI
134-148
2
A:134-148
B:134-148
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(6, 8)
Info
All SCOP Domains
1a: SCOP_d3pv0a2 (A:236-371)
1b: SCOP_d3pv0b2 (B:236-371)
2a: SCOP_d3pv0a1 (A:2-235)
2b: SCOP_d3pv0b1 (B:2-235)
3a: SCOP_d3pv0e_ (E:)
4a: SCOP_d3pv0g_ (G:)
5a: SCOP_d3pv0f2 (F:261-505)
6a: SCOP_d3pv0f1 (F:18-260)
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
MOP-like
(40)
Family
:
ABC-transporter additional domain
(24)
Protein domain
:
Maltose transport protein MalK, C-terminal domain
(16)
Escherichia coli [TaxId: 562]
(15)
1a
d3pv0a2
A:236-371
1b
d3pv0b2
B:236-371
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
Maltose transport protein MalK, N-terminal domain
(16)
Escherichia coli [TaxId: 562]
(15)
2a
d3pv0a1
A:2-235
2b
d3pv0b1
B:2-235
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
D-maltodextrin-binding protein, MBP
(70)
Escherichia coli [TaxId: 562]
(60)
3a
d3pv0e_
E:
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
MetI-like
(24)
Superfamily
:
MetI-like
(24)
Family
:
MetI-like
(24)
Protein domain
:
automated matches
(8)
Escherichia coli K-12 [TaxId: 83333]
(8)
4a
d3pv0g_
G:
Protein domain
:
Maltose transport system permease protein MalF
(10)
Escherichia coli [TaxId: 562]
(10)
5a
d3pv0f2
F:261-505
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
MalF N-terminal region-like
(10)
Superfamily
:
MalF N-terminal region-like
(10)
Family
:
MalF N-terminal region-like
(10)
Protein domain
:
Maltose transport system permease protein MalF
(10)
Escherichia coli [TaxId: 562]
(10)
6a
d3pv0f1
F:18-260
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CATH Domains
(0, 0)
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Pfam Domains
(4, 7)
Info
all PFAM domains
1a: PFAM_BPD_transp_1_3pv0F01 (F:295-505)
1b: PFAM_BPD_transp_1_3pv0G01 (G:97-283)
2a: PFAM_TOBE_2_3pv0B01 (B:283-355)
2b: PFAM_TOBE_2_3pv0B02 (B:283-355)
3a: PFAM_ABC_tran_3pv0B03 (B:43-162)
3b: PFAM_ABC_tran_3pv0B04 (B:43-162)
4a: PFAM_SBP_bac_1_3pv0E01 (E:11-291)
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Clans
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)
(
)
Clan
:
BPD_transp_1
(5)
Family
:
BPD_transp_1
(5)
Escherichia coli (strain K12)
(4)
1a
BPD_transp_1-3pv0F01
F:295-505
1b
BPD_transp_1-3pv0G01
G:97-283
Clan
:
OB
(224)
Family
:
TOBE_2
(15)
Escherichia coli (strain K12)
(7)
2a
TOBE_2-3pv0B01
B:283-355
2b
TOBE_2-3pv0B02
B:283-355
Clan
:
P-loop_NTPase
(1112)
Family
:
ABC_tran
(53)
Escherichia coli (strain K12)
(10)
3a
ABC_tran-3pv0B03
B:43-162
3b
ABC_tran-3pv0B04
B:43-162
Clan
:
PBP
(391)
Family
:
SBP_bac_1
(83)
Escherichia coli (strain K12)
(29)
4a
SBP_bac_1-3pv0E01
E:11-291
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