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3PUY
Asym. Unit
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Asym.Unit (640 KB)
Biol.Unit 1 (631 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN OUTWARD-FACING MBP-MALTOSE TRANSPORTER COMPLEX BOUND TO AMP-PNP AFTER CRYSTAL SOAKING OF THE PRETRANSLOCATION STATE
Authors
:
M. L. Oldham, J. Chen
Date
:
06 Dec 10 (Deposition) - 18 May 11 (Release) - 22 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,E,F,G
Biol. Unit 1: A,B,E,F,G (1x)
Keywords
:
Atp Binding Cassette, Nucleotide Binding Domain, Substrate Binding Protein, Abc Transporter, Importer, Atpase, Atp Binding, Maltodextrin Binding, Transmembrane Integral Membrane, Transport Protein, Membrane Protein
(Keyword Search:
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Reference
:
M. L. Oldham, J. Chen
Crystal Structure Of The Maltose Transporter In A Pretranslocation Intermediate State.
Science V. 332 1202 2011
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
2a: MALTOSE (MALa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
MAL
1
Ligand/Ion
MALTOSE
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
PGV
1
Ligand/Ion
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:43 , GLN A:82 , ASP A:158 , HOH A:382 , HOH A:383 , ANP A:2501
BINDING SITE FOR RESIDUE MG A 1501
2
AC2
SOFTWARE
SER B:43 , GLN B:82 , HOH B:382 , HOH B:383 , ANP B:2502
BINDING SITE FOR RESIDUE MG B 1502
3
AC3
SOFTWARE
TYR F:325 , ASN F:376 , GLY F:380 , TYR F:383 , SER F:433 , PHE F:436 , ASN F:437 , ASN F:440
BINDING SITE FOR RESIDUE MAL F 2001
4
AC4
SOFTWARE
TRP A:13 , VAL A:18 , SER A:38 , GLY A:39 , CYS A:40 , GLY A:41 , LYS A:42 , SER A:43 , THR A:44 , GLN A:82 , GLU A:159 , HIS A:192 , HOH A:382 , HOH A:383 , MG A:1501 , ARG B:129 , ALA B:133 , SER B:135 , GLY B:136 , GLY B:137 , GLN B:138
BINDING SITE FOR RESIDUE ANP A 2501
5
AC5
SOFTWARE
LEU A:126 , ARG A:129 , ALA A:133 , SER A:135 , GLY A:136 , GLY A:137 , GLN A:138 , TRP B:13 , VAL B:18 , SER B:38 , GLY B:39 , CYS B:40 , GLY B:41 , LYS B:42 , SER B:43 , THR B:44 , GLN B:82 , GLU B:159 , HIS B:192 , HOH B:382 , HOH B:383 , MG B:1502
BINDING SITE FOR RESIDUE ANP B 2502
6
AC6
SOFTWARE
CYS F:304 , LEU F:305 , TRP F:308 , TYR F:400 , PRO F:410 , ASN F:413 , ARG G:12 , THR G:16 , PHE G:23
BINDING SITE FOR RESIDUE PGV F 4001
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 5)
Info
All PROSITE Patterns/Profiles
1: ABC_TM1 (G:85-281,F:281-503)
2: SBP_BACTERIAL_1 (E:107-124)
3: ABC_TRANSPORTER_1 (A:134-148,B:134-148)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ABC_TM1
PS50928
ABC transporter integral membrane type-1 domain profile.
MALG_ECOLI
85-281
1
G:85-281
MALF_ECOLI
281-505
1
F:281-503
2
SBP_BACTERIAL_1
PS01037
Bacterial extracellular solute-binding proteins, family 1 signature.
MALE_ECOLI
133-150
1
E:107-124
3
ABC_TRANSPORTER_1
PS00211
ABC transporters family signature.
MALK_ECOLI
134-148
2
A:134-148
B:134-148
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(6, 8)
Info
All SCOP Domains
1a: SCOP_d3puya2 (A:236-372)
1b: SCOP_d3puyb2 (B:236-369)
2a: SCOP_d3puya1 (A:2-235)
2b: SCOP_d3puyb1 (B:2-235)
3a: SCOP_d3puye_ (E:)
4a: SCOP_d3puyg_ (G:)
5a: SCOP_d3puyf2 (F:261-503)
6a: SCOP_d3puyf1 (F:10-260)
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)
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)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
MOP-like
(40)
Family
:
ABC-transporter additional domain
(24)
Protein domain
:
Maltose transport protein MalK, C-terminal domain
(16)
Escherichia coli [TaxId: 562]
(15)
1a
d3puya2
A:236-372
1b
d3puyb2
B:236-369
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
Maltose transport protein MalK, N-terminal domain
(16)
Escherichia coli [TaxId: 562]
(15)
2a
d3puya1
A:2-235
2b
d3puyb1
B:2-235
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
D-maltodextrin-binding protein, MBP
(70)
Escherichia coli [TaxId: 562]
(60)
3a
d3puye_
E:
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
MetI-like
(24)
Superfamily
:
MetI-like
(24)
Family
:
MetI-like
(24)
Protein domain
:
automated matches
(8)
Escherichia coli K-12 [TaxId: 83333]
(8)
4a
d3puyg_
G:
Protein domain
:
Maltose transport system permease protein MalF
(10)
Escherichia coli [TaxId: 562]
(10)
5a
d3puyf2
F:261-503
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
MalF N-terminal region-like
(10)
Superfamily
:
MalF N-terminal region-like
(10)
Family
:
MalF N-terminal region-like
(10)
Protein domain
:
Maltose transport system permease protein MalF
(10)
Escherichia coli [TaxId: 562]
(10)
6a
d3puyf1
F:10-260
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CATH Domains
(0, 0)
Info
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Pfam Domains
(4, 7)
Info
all PFAM domains
1a: PFAM_BPD_transp_1_3puyF01 (F:295-503)
1b: PFAM_BPD_transp_1_3puyG01 (G:97-291)
2a: PFAM_TOBE_2_3puyB01 (B:283-355)
2b: PFAM_TOBE_2_3puyB02 (B:283-355)
3a: PFAM_ABC_tran_3puyB03 (B:43-162)
3b: PFAM_ABC_tran_3puyB04 (B:43-162)
4a: PFAM_SBP_bac_1_3puyE01 (E:11-291)
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Clans
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Families
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Organisms
(
)
(
)
Clan
:
BPD_transp_1
(5)
Family
:
BPD_transp_1
(5)
Escherichia coli (strain K12)
(4)
1a
BPD_transp_1-3puyF01
F:295-503
1b
BPD_transp_1-3puyG01
G:97-291
Clan
:
OB
(224)
Family
:
TOBE_2
(15)
Escherichia coli (strain K12)
(7)
2a
TOBE_2-3puyB01
B:283-355
2b
TOBE_2-3puyB02
B:283-355
Clan
:
P-loop_NTPase
(1112)
Family
:
ABC_tran
(53)
Escherichia coli (strain K12)
(10)
3a
ABC_tran-3puyB03
B:43-162
3b
ABC_tran-3puyB04
B:43-162
Clan
:
PBP
(391)
Family
:
SBP_bac_1
(83)
Escherichia coli (strain K12)
(29)
4a
SBP_bac_1-3puyE01
E:11-291
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