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3PUS
Asym. Unit
Info
Asym.Unit (252 KB)
Biol.Unit 1 (125 KB)
Biol.Unit 2 (124 KB)
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(1)
Title
:
PHF2 JUMONJI-NOG-NI(II)
Authors
:
J. R. Horton, A. K. Upadhyay, H. Hashimoto, X. Zhang, X. Cheng
Date
:
06 Dec 10 (Deposition) - 26 Jan 11 (Release) - 29 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.08
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Alpha-Ketoglutarate-Fe2+ Dependent Dioxygenases, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Horton, A. K. Upadhyay, H. Hashimoto, X. Zhang, X. Cheng
Structural Basis For Human Phf2 Jumonji Domain Interaction With Metal Ions.
J. Mol. Biol. V. 406 1 2011
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Hetero Components
(5, 21)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
3a: NICKEL (II) ION (NIa)
3b: NICKEL (II) ION (NIb)
4a: N-OXALYLGLYCINE (OGAa)
4b: N-OXALYLGLYCINE (OGAb)
5a: OXYGEN MOLECULE (OXYa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
EDO
14
Ligand/Ion
1,2-ETHANEDIOL
3
NI
2
Ligand/Ion
NICKEL (II) ION
4
OGA
2
Ligand/Ion
N-OXALYLGLYCINE
5
OXY
1
Ligand/Ion
OXYGEN MOLECULE
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:375 , HIS A:425 , PHE A:426 , LYS A:427
BINDING SITE FOR RESIDUE EDO A 1
02
AC2
SOFTWARE
ARG A:201
BINDING SITE FOR RESIDUE EDO A 2
03
AC3
SOFTWARE
HOH A:47 , LEU A:113 , GLY A:134 , LYS A:214
BINDING SITE FOR RESIDUE EDO A 7
04
AC4
SOFTWARE
TYR A:372 , GLU A:424
BINDING SITE FOR RESIDUE EDO A 8
05
AC5
SOFTWARE
PRO A:130 , LYS A:131 , GLN A:311 , ASP B:179
BINDING SITE FOR RESIDUE EDO A 10
06
AC6
SOFTWARE
HOH A:24 , SER A:216 , TRP A:217 , VAL A:218 , PHE A:336 , LEU A:337
BINDING SITE FOR RESIDUE CL A 3
07
AC7
SOFTWARE
HIS A:249 , ASP A:251 , TYR A:321 , OGA A:453 , HOH A:500
BINDING SITE FOR RESIDUE NI A 452
08
AC8
SOFTWARE
THR A:246 , HIS A:249 , ASP A:251 , TYR A:259 , LYS A:266 , TYR A:321 , THR A:323 , HIS A:335 , NI A:452 , HOH A:492
BINDING SITE FOR RESIDUE OGA A 453
09
AC9
SOFTWARE
THR B:193 , HIS B:335 , OGA B:453
BINDING SITE FOR RESIDUE OXY B 2
10
BC1
SOFTWARE
ARG A:107 , VAL A:108 , PRO A:109 , PRO A:130 , ASP B:179 , TYR B:182 , SER B:183
BINDING SITE FOR RESIDUE EDO B 3
11
BC2
SOFTWARE
LYS B:375 , PHE B:426 , LYS B:427
BINDING SITE FOR RESIDUE EDO B 4
12
BC3
SOFTWARE
ASP A:297 , GLN A:298 , VAL A:299 , HIS B:425
BINDING SITE FOR RESIDUE EDO B 5
13
BC4
SOFTWARE
THR B:234 , LYS B:235
BINDING SITE FOR RESIDUE EDO B 6
14
BC5
SOFTWARE
GLY B:110 , LEU B:113 , GLY B:134 , LYS B:214 , HOH B:476
BINDING SITE FOR RESIDUE EDO B 9
15
BC6
SOFTWARE
SER B:198 , LYS B:230 , LYS B:232 , HOH B:468
BINDING SITE FOR RESIDUE EDO B 11
16
BC7
SOFTWARE
SER A:275 , HOH B:45 , LEU B:228 , ALA B:229 , ASN B:365
BINDING SITE FOR RESIDUE EDO B 12
17
BC8
SOFTWARE
LYS A:400 , LYS B:171
BINDING SITE FOR RESIDUE EDO B 13
18
BC9
SOFTWARE
ASP A:420 , PRO B:273 , SER B:275 , ILE B:278 , MET B:344 , ARG B:347
BINDING SITE FOR RESIDUE EDO B 14
19
CC1
SOFTWARE
SER B:216 , TRP B:217 , VAL B:218 , PHE B:336 , LEU B:337 , HOH B:488
BINDING SITE FOR RESIDUE CL B 452
20
CC2
SOFTWARE
HIS B:249 , ASP B:251 , TYR B:321 , OGA B:453 , HOH B:486
BINDING SITE FOR RESIDUE NI B 1
21
CC3
SOFTWARE
NI B:1 , OXY B:2 , LEU B:238 , THR B:246 , HIS B:249 , ASP B:251 , TYR B:259 , LYS B:266 , TYR B:321 , THR B:323 , HIS B:335 , HOH B:493
BINDING SITE FOR RESIDUE OGA B 453
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: JMJC (A:197-353,B:197-353)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
JMJC
PS51184
JmjC domain profile.
PHF2_HUMAN
197-353
2
A:197-353
B:197-353
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_JmjC_3pusB01 (B:236-336)
1b: PFAM_JmjC_3pusB02 (B:236-336)
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Clans
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Organisms
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)
(
)
Clan
:
Cupin
(179)
Family
:
JmjC
(39)
Homo sapiens (Human)
(31)
1a
JmjC-3pusB01
B:236-336
1b
JmjC-3pusB02
B:236-336
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (252 KB)
Header - Asym.Unit
Biol.Unit 1 (125 KB)
Header - Biol.Unit 1
Biol.Unit 2 (124 KB)
Header - Biol.Unit 2
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