PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3PUF
Biol. Unit 2
Info
Asym.Unit (535 KB)
Biol.Unit 1 (97 KB)
Biol.Unit 2 (96 KB)
Biol.Unit 3 (101 KB)
Biol.Unit 4 (92 KB)
Biol.Unit 5 (93 KB)
Biol.Unit 6 (88 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN RNASE H2 COMPLEX
Authors
:
M. Figiel, H. Chon, S. M. Cerritelli, M. Cybulska, R. J. Crouch, M. Nowot
Date
:
04 Dec 10 (Deposition) - 22 Dec 10 (Release) - 29 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Biol. Unit 5: M,N,O (1x)
Biol. Unit 6: P,Q,R (1x)
Keywords
:
Rnase H Fold, Triple Barrel Fold, Hydrolase, Rnase H
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Figiel, H. Chon, S. M. Cerritelli, M. Cybulska, R. J. Crouch, M. Nowotny
The Structural And Biochemical Characterization Of Human Rnase H2 Complex Reveals The Molecular Basis For Substrate Recognition And Aicardi-Goutieres Syndrome Defects.
J. Biol. Chem. V. 286 10540 2011
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(30, 30)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_070618 (R13H, chain F, )
02: VAR_027377 (G37S, chain D, )
03: VAR_070619 (D39Y, chain F, )
04: VAR_070611 (P43H, chain E, )
05: VAR_027280 (L60R, chain E, )
06: VAR_027287 (R69W, chain F, )
07: VAR_070612 (W73L, chain E, )
08: VAR_070620 (P76L, chain F, )
09: VAR_070613 (G83S, chain E, )
10: VAR_027281 (H86R, chain E, )
11: VAR_070624 (N99D, chain D, )
12: VAR_070625 (R108W, chain D, )
13: VAR_070614 (L138F, chain E, )
14: VAR_070621 (P138L, chain F, )
15: VAR_027288 (K143I, chain F, )
16: VAR_070622 (P151S, chain F, )
17: VAR_070615 (S159I, chain E, )
18: VAR_027282 (K162T, chain E, )
19: VAR_027283 (T163I, chain E, )
20: VAR_027284 (A177T, chain E, )
21: VAR_070616 (V183M, chain E, )
22: VAR_070626 (R186W, chain D, )
23: VAR_024617 (L202S, chain D, )
24: VAR_070627 (D205E, chain D, )
25: VAR_027286 (Y219H, chain E, )
26: VAR_070628 (F230L, chain D, )
27: VAR_070629 (R235Q, chain D, )
28: VAR_070630 (T240M, chain D, )
29: VAR_027378 (A258G, chain D, )
30: VAR_070632 (R291H, chain D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_070618
R
13
H
RNH2C_HUMAN
Disease (AGS3)
---
F
R
13
H
02
UniProt
VAR_027377
G
37
S
RNH2A_HUMAN
Disease (AGS4)
---
D
G
37
S
03
UniProt
VAR_070619
D
39
Y
RNH2C_HUMAN
Disease (AGS3)
---
F
D
39
Y
04
UniProt
VAR_070611
P
43
H
RNH2B_HUMAN
Disease (AGS2)
---
E
P
43
H
05
UniProt
VAR_027280
L
60
R
RNH2B_HUMAN
Disease (AGS2)
---
E
L
60
R
06
UniProt
VAR_027287
R
69
W
RNH2C_HUMAN
Disease (AGS3)
---
F
R
69
W
07
UniProt
VAR_070612
W
73
L
RNH2B_HUMAN
Disease (AGS2)
---
E
W
73
L
08
UniProt
VAR_070620
P
76
L
RNH2C_HUMAN
Disease (AGS3)
---
F
P
76
L
09
UniProt
VAR_070613
G
83
S
RNH2B_HUMAN
Disease (AGS2)
---
E
G
83
S
10
UniProt
VAR_027281
H
86
R
RNH2B_HUMAN
Disease (AGS2)
---
E
H
86
R
11
UniProt
VAR_070624
N
99
D
RNH2A_HUMAN
Polymorphism
---
D
N
99
D
12
UniProt
VAR_070625
R
108
W
RNH2A_HUMAN
Disease (AGS4)
---
D
R
108
W
13
UniProt
VAR_070614
L
138
F
RNH2B_HUMAN
Disease (AGS2)
---
E
L
138
F
14
UniProt
VAR_070621
P
138
L
RNH2C_HUMAN
Disease (AGS3)
---
F
P
138
L
15
UniProt
VAR_027288
K
143
I
RNH2C_HUMAN
Disease (AGS3)
---
F
K
143
I
16
UniProt
VAR_070622
P
151
S
RNH2C_HUMAN
Disease (AGS3)
---
F
P
151
S
17
UniProt
VAR_070615
S
159
I
RNH2B_HUMAN
Disease (AGS2)
---
E
S
159
I
18
UniProt
VAR_027282
K
162
T
RNH2B_HUMAN
Disease (AGS2)
---
E
K
162
T
19
UniProt
VAR_027283
T
163
I
RNH2B_HUMAN
Disease (AGS2)
---
E
T
163
I
20
UniProt
VAR_027284
A
177
T
RNH2B_HUMAN
Disease (AGS2)
---
E
A
177
T
21
UniProt
VAR_070616
V
183
M
RNH2B_HUMAN
Disease (AGS2)
---
E
V
183
M
23
UniProt
VAR_070626
R
186
W
RNH2A_HUMAN
Disease (AGS4)
---
D
R
186
W
24
UniProt
VAR_024617
L
202
S
RNH2A_HUMAN
Polymorphism
7247284
D
L
202
S
25
UniProt
VAR_070627
D
205
E
RNH2A_HUMAN
Polymorphism
---
D
D
205
E
26
UniProt
VAR_027286
Y
219
H
RNH2B_HUMAN
Disease (AGS2)
---
E
Y
219
H
28
UniProt
VAR_070628
F
230
L
RNH2A_HUMAN
Disease (AGS4)
---
D
F
230
L
29
UniProt
VAR_070629
R
235
Q
RNH2A_HUMAN
Disease (AGS4)
---
D
R
235
Q
30
UniProt
VAR_070630
T
240
M
RNH2A_HUMAN
Disease (AGS4)
---
D
T
240
M
31
UniProt
VAR_027378
A
258
G
RNH2A_HUMAN
Polymorphism
15389
D
A
258
G
32
UniProt
VAR_070632
R
291
H
RNH2A_HUMAN
Disease (AGS4)
---
D
R
291
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (535 KB)
Header - Asym.Unit
Biol.Unit 1 (97 KB)
Header - Biol.Unit 1
Biol.Unit 2 (96 KB)
Header - Biol.Unit 2
Biol.Unit 3 (101 KB)
Header - Biol.Unit 3
Biol.Unit 4 (92 KB)
Header - Biol.Unit 4
Biol.Unit 5 (93 KB)
Header - Biol.Unit 5
Biol.Unit 6 (88 KB)
Header - Biol.Unit 6
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3PUF
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help