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3PU3
Asym. Unit
Info
Asym.Unit (136 KB)
Biol.Unit 1 (67 KB)
Biol.Unit 2 (67 KB)
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(1)
Title
:
PHF2 JUMONJI DOMAIN-NOG COMPLEX
Authors
:
J. R. Horton, A. K. Upadhyay, H. Hashimoto, X. Zhang, X. Cheng
Date
:
03 Dec 10 (Deposition) - 26 Jan 11 (Release) - 29 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Alpha-Ketoglutarate-Fe2+ Dependent Dioxygenases, Histone Tail Binding Protein, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Horton, A. K. Upadhyay, H. Hashimoto, X. Zhang, X. Cheng
Structural Basis For Human Phf2 Jumonji Domain Interaction With Metal Ions.
J. Mol. Biol. V. 406 1 2011
[
close entry info
]
Hetero Components
(3, 46)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1ag: 1,2-ETHANEDIOL (EDOag)
1ah: 1,2-ETHANEDIOL (EDOah)
1ai: 1,2-ETHANEDIOL (EDOai)
1aj: 1,2-ETHANEDIOL (EDOaj)
1ak: 1,2-ETHANEDIOL (EDOak)
1al: 1,2-ETHANEDIOL (EDOal)
1am: 1,2-ETHANEDIOL (EDOam)
1an: 1,2-ETHANEDIOL (EDOan)
1ao: 1,2-ETHANEDIOL (EDOao)
1ap: 1,2-ETHANEDIOL (EDOap)
1aq: 1,2-ETHANEDIOL (EDOaq)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: GLYCEROL (GOLa)
3a: N-OXALYLGLYCINE (OGAa)
3b: N-OXALYLGLYCINE (OGAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
43
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
1
Ligand/Ion
GLYCEROL
3
OGA
2
Ligand/Ion
N-OXALYLGLYCINE
[
close Hetero Component info
]
Sites
(45, 45)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:193 , THR A:246 , HIS A:249 , ASP A:251 , TYR A:259 , THR A:323 , HIS A:335 , HOH A:506
BINDING SITE FOR RESIDUE OGA A 1
02
AC2
SOFTWARE
EDO B:49 , THR B:193 , LEU B:238 , CYS B:240 , THR B:246 , HIS B:249 , ASP B:251 , TYR B:259 , LYS B:266 , TYR B:321 , THR B:323
BINDING SITE FOR RESIDUE OGA B 2
03
AC3
SOFTWARE
SER B:317 , SER B:341 , HOH B:505 , HOH B:513
BINDING SITE FOR RESIDUE EDO B 1
04
AC4
SOFTWARE
EDO B:4 , HOH B:19 , SER B:339 , LEU B:340 , SER B:341 , VAL B:342 , GLU B:343 , HIS B:394 , ILE B:401
BINDING SITE FOR RESIDUE EDO B 452
05
AC5
SOFTWARE
GLU B:343 , EDO B:452
BINDING SITE FOR RESIDUE EDO B 4
06
AC6
SOFTWARE
EDO A:6 , LYS A:214 , LEU A:215 , TRP A:217 , ASN A:220 , TYR A:221 , SER A:339
BINDING SITE FOR RESIDUE EDO A 5
07
AC7
SOFTWARE
EDO A:5 , TYR A:221 , SER A:339 , MET A:373 , HIS A:376 , LEU A:395 , HOH A:511
BINDING SITE FOR RESIDUE EDO A 6
08
AC8
SOFTWARE
ARG A:107 , PRO A:130 , HOH A:472 , ASP B:179 , TYR B:182
BINDING SITE FOR RESIDUE EDO B 7
09
AC9
SOFTWARE
LYS A:375 , PHE A:426 , LYS A:427 , HOH A:537
BINDING SITE FOR RESIDUE EDO A 9
10
BC1
SOFTWARE
EDO A:20 , TYR A:221 , TYR A:372 , GLU A:379
BINDING SITE FOR RESIDUE EDO A 10
11
BC2
SOFTWARE
EDO A:16 , PRO A:208 , VAL A:212 , THR A:234 , TRP A:258 , GLY A:334 , HIS A:335 , HOH A:484
BINDING SITE FOR RESIDUE EDO A 11
12
BC3
SOFTWARE
SER A:198 , LYS A:230 , PRO A:231 , LYS A:232 , THR A:234 , HOH A:465 , HOH A:503
BINDING SITE FOR RESIDUE GOL A 12
13
BC4
SOFTWARE
TYR B:221 , TYR B:372
BINDING SITE FOR RESIDUE EDO B 13
14
BC5
SOFTWARE
HOH A:614
BINDING SITE FOR RESIDUE EDO A 14
15
BC6
SOFTWARE
EDO A:11 , EDO A:24 , VAL A:212 , LYS A:213 , SER A:216 , GLU A:219 , HOH A:484
BINDING SITE FOR RESIDUE EDO A 16
16
BC7
SOFTWARE
SER A:408 , HIS A:418
BINDING SITE FOR RESIDUE EDO A 17
17
BC8
SOFTWARE
ALA A:101 , GLU A:102 , VAL A:105 , ARG A:107 , HOH A:587
BINDING SITE FOR RESIDUE EDO A 18
18
BC9
SOFTWARE
GLU A:419 , LEU A:422 , PRO A:423 , GLU A:424 , HOH A:551 , HOH A:595 , ALA B:274 , ALA B:276 , ASN B:277 , HOH B:531
BINDING SITE FOR RESIDUE EDO A 19
19
CC1
SOFTWARE
EDO A:10 , ASN A:220 , HOH A:604
BINDING SITE FOR RESIDUE EDO A 20
20
CC2
SOFTWARE
GLU A:102 , TYR B:145 , VAL B:146 , TYR B:181 , TYR B:182 , HOH B:587
BINDING SITE FOR RESIDUE EDO B 21
21
CC3
SOFTWARE
PRO B:208 , VAL B:233 , THR B:234 , TRP B:258 , GLY B:334 , HIS B:335 , HOH B:461 , HOH B:469 , HOH B:618
BINDING SITE FOR RESIDUE EDO B 22
22
CC4
SOFTWARE
MET A:293 , PHE A:294 , ASP A:297 , GLN A:298
BINDING SITE FOR RESIDUE EDO A 23
23
CC5
SOFTWARE
EDO A:16 , VAL A:218 , GLU A:219 , LYS A:230 , THR A:234 , HOH A:484
BINDING SITE FOR RESIDUE EDO A 24
24
CC6
SOFTWARE
HIS A:249 , ILE A:250 , THR A:361 , HOH A:501
BINDING SITE FOR RESIDUE EDO A 26
25
CC7
SOFTWARE
HOH B:17 , ALA B:229 , ASN B:365
BINDING SITE FOR RESIDUE EDO B 28
26
CC8
SOFTWARE
HOH B:17 , LYS B:230 , LYS B:232 , PRO B:364 , HOH B:493
BINDING SITE FOR RESIDUE EDO B 29
27
CC9
SOFTWARE
GLY B:404
BINDING SITE FOR RESIDUE EDO B 30
28
DC1
SOFTWARE
HOH A:469 , HOH A:502 , GLU B:343 , MET B:344 , ARG B:347
BINDING SITE FOR RESIDUE EDO B 31
29
DC2
SOFTWARE
GLU A:119
BINDING SITE FOR RESIDUE EDO A 33
30
DC3
SOFTWARE
SER A:286 , LEU A:355
BINDING SITE FOR RESIDUE EDO A 34
31
DC4
SOFTWARE
ASP A:300 , HOH A:486 , LYS B:427
BINDING SITE FOR RESIDUE EDO A 35
32
DC5
SOFTWARE
ARG A:407 , HOH A:573
BINDING SITE FOR RESIDUE EDO A 36
33
DC6
SOFTWARE
ARG A:201 , HOH A:531 , HOH A:618
BINDING SITE FOR RESIDUE EDO A 37
34
DC7
SOFTWARE
LEU B:137
BINDING SITE FOR RESIDUE EDO B 38
35
DC8
SOFTWARE
ASP B:210
BINDING SITE FOR RESIDUE EDO B 39
36
DC9
SOFTWARE
HOH B:616
BINDING SITE FOR RESIDUE EDO B 40
37
EC1
SOFTWARE
EDO B:43 , ARG B:283 , TRP B:284 , ALA B:287 , MET B:293 , GLN B:298 , HOH B:536
BINDING SITE FOR RESIDUE EDO B 41
38
EC2
SOFTWARE
LEU A:93 , ARG A:94 , ARG A:96 , PHE A:98 , TYR A:269 , LYS A:304 , HOH A:558
BINDING SITE FOR RESIDUE EDO A 42
39
EC3
SOFTWARE
EDO B:41 , LEU B:280 , ARG B:283 , TRP B:284 , GLN B:298
BINDING SITE FOR RESIDUE EDO B 43
40
EC4
SOFTWARE
GLU B:265
BINDING SITE FOR RESIDUE EDO B 44
41
EC5
SOFTWARE
LEU B:115 , GLU B:119 , HIS B:394
BINDING SITE FOR RESIDUE EDO B 45
42
EC6
SOFTWARE
PRO A:155 , GLU A:156 , LYS A:175 , LYS B:308
BINDING SITE FOR RESIDUE EDO A 46
43
EC7
SOFTWARE
PRO B:223 , ASP B:225 , HOH B:462 , HOH B:535
BINDING SITE FOR RESIDUE EDO B 47
44
EC8
SOFTWARE
ARG B:347 , GLU B:350 , ARG B:354
BINDING SITE FOR RESIDUE EDO B 48
45
EC9
SOFTWARE
OGA B:2 , THR B:193 , ASN B:194 , TYR B:236 , HIS B:335 , THR B:361
BINDING SITE FOR RESIDUE EDO B 49
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: JMJC (A:197-353,B:197-353)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
JMJC
PS51184
JmjC domain profile.
PHF2_HUMAN
197-353
2
A:197-353
B:197-353
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_JmjC_3pu3B01 (B:236-336)
1b: PFAM_JmjC_3pu3B02 (B:236-336)
View:
Select:
Label:
Clans
(
)
(
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
Cupin
(179)
Family
:
JmjC
(39)
Homo sapiens (Human)
(31)
1a
JmjC-3pu3B01
B:236-336
1b
JmjC-3pu3B02
B:236-336
[
close Pfam info
]
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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